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The map label for this gene is ywlC [H]

Identifier: 170078339

GI number: 170078339

Start: 1819180

End: 1819815

Strand: Reverse

Name: ywlC [H]

Synonym: SYNPCC7002_A1732

Alternate gene names: 170078339

Gene position: 1819815-1819180 (Counterclockwise)

Preceding gene: 170078340

Following gene: 170078330

Centisome position: 60.5

GC content: 51.1

Gene sequence:

>636_bases
ATGGCAACATTTTTGCCCAAATCTCCCCAGGCGATCGCCCCGATCATCGAACAACTAGACCGTGGGCAGGTCGTCGTGAT
CCATACCGACGTAGTGTATCTGCTCATTGCCAATGCCCTAAATCCCCAGGCGACCAATCAGATCCACGAACTCAAAGGCT
GGGAGCCCCGCAAACCCTTGACGCTTCTTTTAACGCCCCCAAAAGTACCTGAATACGGCATCCTCAGTGCCGAAGCCCAA
ACCCTCGTCAATCAATTTCCCTATCCCATTAGCGTCATTCTTCCCCACCGCAACAACTTGGCTGAAGGGGTAACTGCTGG
TCATAGTGAGGTTTTTGTGTCCTGTCCTGACCAATTTATCTACGACCTCGCCGCCCAAGCTCCTTTTCCCATTGCCGCTG
GCACCGCAAGTTTAGGGAGTGAGATGCGTGCAAATGATGCAAAAACCGCTGAAGCCTTTTTTGGGCAACAAGTTTCGCTC
ATTATCGATGGCGGCAAGGCCAAGGAACGCATCCGCACCACCCTCATTGATTGCCACTTGCCTTTACCGACCATTTTGAA
TTTTGGTCTGGTGTCCTTTGATGATTTGCGGGAAATTATTCCCCACATCGAATTGCCTTCTCACCTGCGGAAATAA

Upstream 100 bases:

>100_bases
TAGATTAGATATGCGAAAAATTAAATATTTTAATGCAAAAAAACGCATCATGCAGCAATTGCATCACTTAGGATAGAAAA
AATAGCTAGGTGCAATTACT

Downstream 100 bases:

>100_bases
AAGCTCGTCGTTCACAGTTGCTCATCATCACCCAACAGCTCTGAACCAGAACTGCCCGTTAAAAACATGATATTTGCCCC
TTTTAGTTTACGGCGGAGGT

Product: YrdC domain-containing protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein YwlC [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPLTLLLTPPKVPEYGILSAEAQ
TLVNQFPYPISVILPHRNNLAEGVTAGHSEVFVSCPDQFIYDLAAQAPFPIAAGTASLGSEMRANDAKTAEAFFGQQVSL
IIDGGKAKERIRTTLIDCHLPLPTILNFGLVSFDDLREIIPHIELPSHLRK

Sequences:

>Translated_211_residues
MATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPLTLLLTPPKVPEYGILSAEAQ
TLVNQFPYPISVILPHRNNLAEGVTAGHSEVFVSCPDQFIYDLAAQAPFPIAAGTASLGSEMRANDAKTAEAFFGQQVSL
IIDGGKAKERIRTTLIDCHLPLPTILNFGLVSFDDLREIIPHIELPSHLRK
>Mature_210_residues
ATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPLTLLLTPPKVPEYGILSAEAQT
LVNQFPYPISVILPHRNNLAEGVTAGHSEVFVSCPDQFIYDLAAQAPFPIAAGTASLGSEMRANDAKTAEAFFGQQVSLI
IDGGKAKERIRTTLIDCHLPLPTILNFGLVSFDDLREIIPHIELPSHLRK

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (Probable) [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR005145
- InterPro:   IPR004388
- InterPro:   IPR006070
- InterPro:   IPR010923 [H]

Pfam domain/function: PF03481 SUA5; PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23110; Mature: 22979

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPL
CCCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCE
TLLLTPPKVPEYGILSAEAQTLVNQFPYPISVILPHRNNLAEGVTAGHSEVFVSCPDQFI
EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCCEEEEECCHHHH
YDLAAQAPFPIAAGTASLGSEMRANDAKTAEAFFGQQVSLIIDGGKAKERIRTTLIDCHL
HHHHHCCCCCEECCCHHHHHHHHCCCCHHHHHHHCCEEEEEEECCHHHHHHHHHHHHCCC
PLPTILNFGLVSFDDLREIIPHIELPSHLRK
CHHHHHHCCCCCHHHHHHHHCCCCCCHHHCC
>Mature Secondary Structure 
ATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPL
CCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCE
TLLLTPPKVPEYGILSAEAQTLVNQFPYPISVILPHRNNLAEGVTAGHSEVFVSCPDQFI
EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCCEEEEECCHHHH
YDLAAQAPFPIAAGTASLGSEMRANDAKTAEAFFGQQVSLIIDGGKAKERIRTTLIDCHL
HHHHHCCCCCEECCCHHHHHHHHCCCCHHHHHHHCCEEEEEEECCHHHHHHHHHHHHCCC
PLPTILNFGLVSFDDLREIIPHIELPSHLRK
CHHHHHHCCCCCHHHHHHHHCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]