| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078319
Identifier: 170078319
GI number: 170078319
Start: 1798118
End: 1798537
Strand: Reverse
Name: 170078319
Synonym: SYNPCC7002_A1712
Alternate gene names: NA
Gene position: 1798537-1798118 (Counterclockwise)
Preceding gene: 170078321
Following gene: 170078318
Centisome position: 59.79
GC content: 50.48
Gene sequence:
>420_bases ATGGGTCAAGCGGTGACTGGCGCGAGTATCAATGTGGATCGTTGTTCCATCCGGCGGGCTAGTGAACGTAGTGTTAACTT CACTTACTACCTCGGCCAAATGAAAATTAATGCCCAGGCCCATTGTTGGGATAACACCTGGACGAGCTTCCATGATGGTG TGACCCATAGTCCCAGATCCACGGCCACCCAAAATATGCTGAACTTTGTCTGTGATGGTAATCCTGGTAATACGGGCGCA AATGATACTGCTTTTGTCTTTGCTCCCCCCTCGAATGTCCGCACTTACCCCAATGGGCCAATTTTGTGCACCGTGCGATC GCGCCAAACCATCAACCTCTATGGCAACCAAGGAAATTGGTTCTATACCGATGTCTGCGGCGGCATGGGGATGATTCACT CTAGCCAAATTCGCTTCTAG
Upstream 100 bases:
>100_bases TGCACCGATCCCTAAGTCTGTTGCTAGTCCCCTCGGTTTAGTCCTGGCCACAGCCCTAGGCCCCCAGAAAAATCTCAATG CCCAATCCTGCAACGTCTAT
Downstream 100 bases:
>100_bases GAACGGAGGGCAAGACTCAATGTTGAGGCCCAAGATTGGGCAAGGGGTGGGGAATTTTTGGTCTTAGGTTGACGCCTCGC TCAATGGAAAAATTATTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MGQAVTGASINVDRCSIRRASERSVNFTYYLGQMKINAQAHCWDNTWTSFHDGVTHSPRSTATQNMLNFVCDGNPGNTGA NDTAFVFAPPSNVRTYPNGPILCTVRSRQTINLYGNQGNWFYTDVCGGMGMIHSSQIRF
Sequences:
>Translated_139_residues MGQAVTGASINVDRCSIRRASERSVNFTYYLGQMKINAQAHCWDNTWTSFHDGVTHSPRSTATQNMLNFVCDGNPGNTGA NDTAFVFAPPSNVRTYPNGPILCTVRSRQTINLYGNQGNWFYTDVCGGMGMIHSSQIRF >Mature_138_residues GQAVTGASINVDRCSIRRASERSVNFTYYLGQMKINAQAHCWDNTWTSFHDGVTHSPRSTATQNMLNFVCDGNPGNTGAN DTAFVFAPPSNVRTYPNGPILCTVRSRQTINLYGNQGNWFYTDVCGGMGMIHSSQIRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15364; Mature: 15233
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQAVTGASINVDRCSIRRASERSVNFTYYLGQMKINAQAHCWDNTWTSFHDGVTHSPRS CCCCCCCCEEECCCEECCCCCCCCEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCC TATQNMLNFVCDGNPGNTGANDTAFVFAPPSNVRTYPNGPILCTVRSRQTINLYGNQGNW HHHHHHEEEEECCCCCCCCCCCEEEEEECCCCCEECCCCCEEEEECCCEEEEEEECCCCE FYTDVCGGMGMIHSSQIRF EEEECCCCCCCEECCEECC >Mature Secondary Structure GQAVTGASINVDRCSIRRASERSVNFTYYLGQMKINAQAHCWDNTWTSFHDGVTHSPRS CCCCCCCEEECCCEECCCCCCCCEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCC TATQNMLNFVCDGNPGNTGANDTAFVFAPPSNVRTYPNGPILCTVRSRQTINLYGNQGNW HHHHHHEEEEECCCCCCCCCCCEEEEEECCCCCEECCCCCEEEEECCCEEEEEEECCCCE FYTDVCGGMGMIHSSQIRF EEEECCCCCCCEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA