| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078318
Identifier: 170078318
GI number: 170078318
Start: 1796757
End: 1797905
Strand: Reverse
Name: 170078318
Synonym: SYNPCC7002_A1711
Alternate gene names: NA
Gene position: 1797905-1796757 (Counterclockwise)
Preceding gene: 170078319
Following gene: 170078316
Centisome position: 59.77
GC content: 45.6
Gene sequence:
>1149_bases ATGCCCATCGATAACGCACCACAATTAGAGCGTCTACTCTCTTTAGTCAAGGAAGGTCAGCTTACCCAGGAGGAGTTTGG TGTACTCCAGGCTCACTTTGACCTCAAAATAACTCCCCCCCCTCAAGGTACGACGAATCAGACGACTGCGGCCCCAGAGT CCCCATCGACGGAAGAAAAAACCGCCGATTCTTTTTGGAAGAAGCCGATTTTTGGCAACAAGAGCTTGGTGGAGAAGGTC ACAAACTATTTTGCGAAGCCTCCGGTTCCCCCTTATTCTCTTGATCGCTATGGGCAGCTTTGGAAGCAACTTGAAACGAA GGCGATCACTCTCCAGGGCTTAGAAAATCGAAAATTCGGCAATCAGGAGTTCCTTGATTTCTTTCGGATTCGGATTTTAA TCGATCTGAACATGGGCACCTTTAAAAATCTCAAGAATACGATTGATTTGTTTGAGGTGATGTTATTTTCCCTTGAAAGT TTTGTCTTGATTAACGAAACGGAATTTCTGTATCGCAGCCCGACTCAGCTTAAGGTCTATGAGGCGATCGCCGATATCTT AGACAACCACACCGACACCACCGAGATTGTCCTTGAAATGAAAGCGAAAGTCACCCCTTTCCTCAAGGAATTTAAAACCG ATGAGGGATTGCGAGTTACCAAAAACTATATTTTGGCGATTAAAGAGGTCAGTCGCTATAAAAGTGGCGTGAAGTTGCTG AACATTTTGAGAAACCTGAAATCCCGCTATTCTCTGCTGTTATCAACCTTTAAACTAGCTCAGGAAGTATTGACACAGCC GATTGGCACCGATCTAGAGGTTTTGGAGCAGCGGGTTTCGGAGATCGAAGAAACGGTTTACACGCTGTGTTCGGCGATGG GGATGCCGAGGAACCAAAATAACCTTTTGGGCCATGTGAAAGTGTTTCACTTTCTCGCACTGAACTACCGCAATAAAAAC GCAGGGGCTGAGTTTAAGGCTCTCCTGGGGGATCTCAGAAAGTGGGAGCAGATTGCTGGGGAGTTACAGAGCATTAAAGA TACCTATCCTCCCAATGATTATGATGTGCCGGATGTTTTTAAGCAGGATTTCCCCGGTTTACCCCTCTATCAGAAATACC AGCGTTTTTTGAATATTCGTAAGGCATAG
Upstream 100 bases:
>100_bases CGGTTTCGTAAAAGATCAACAACGCAATGTAACAAACCCCAGGGGAGAGATACACTACATGGTAGCGCTGGGGTTATTTG ATCAAATCAGTGAGGAAAGC
Downstream 100 bases:
>100_bases GGGACGACGGTGCTGGATTTTTTGAGGGGTCAAGACTCGGCATCCCTGGGGAATTGGCAAAGGGCTTGTTGGGCGATCGC CTGCCAGGATTGTCCAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MPIDNAPQLERLLSLVKEGQLTQEEFGVLQAHFDLKITPPPQGTTNQTTAAPESPSTEEKTADSFWKKPIFGNKSLVEKV TNYFAKPPVPPYSLDRYGQLWKQLETKAITLQGLENRKFGNQEFLDFFRIRILIDLNMGTFKNLKNTIDLFEVMLFSLES FVLINETEFLYRSPTQLKVYEAIADILDNHTDTTEIVLEMKAKVTPFLKEFKTDEGLRVTKNYILAIKEVSRYKSGVKLL NILRNLKSRYSLLLSTFKLAQEVLTQPIGTDLEVLEQRVSEIEETVYTLCSAMGMPRNQNNLLGHVKVFHFLALNYRNKN AGAEFKALLGDLRKWEQIAGELQSIKDTYPPNDYDVPDVFKQDFPGLPLYQKYQRFLNIRKA
Sequences:
>Translated_382_residues MPIDNAPQLERLLSLVKEGQLTQEEFGVLQAHFDLKITPPPQGTTNQTTAAPESPSTEEKTADSFWKKPIFGNKSLVEKV TNYFAKPPVPPYSLDRYGQLWKQLETKAITLQGLENRKFGNQEFLDFFRIRILIDLNMGTFKNLKNTIDLFEVMLFSLES FVLINETEFLYRSPTQLKVYEAIADILDNHTDTTEIVLEMKAKVTPFLKEFKTDEGLRVTKNYILAIKEVSRYKSGVKLL NILRNLKSRYSLLLSTFKLAQEVLTQPIGTDLEVLEQRVSEIEETVYTLCSAMGMPRNQNNLLGHVKVFHFLALNYRNKN AGAEFKALLGDLRKWEQIAGELQSIKDTYPPNDYDVPDVFKQDFPGLPLYQKYQRFLNIRKA >Mature_381_residues PIDNAPQLERLLSLVKEGQLTQEEFGVLQAHFDLKITPPPQGTTNQTTAAPESPSTEEKTADSFWKKPIFGNKSLVEKVT NYFAKPPVPPYSLDRYGQLWKQLETKAITLQGLENRKFGNQEFLDFFRIRILIDLNMGTFKNLKNTIDLFEVMLFSLESF VLINETEFLYRSPTQLKVYEAIADILDNHTDTTEIVLEMKAKVTPFLKEFKTDEGLRVTKNYILAIKEVSRYKSGVKLLN ILRNLKSRYSLLLSTFKLAQEVLTQPIGTDLEVLEQRVSEIEETVYTLCSAMGMPRNQNNLLGHVKVFHFLALNYRNKNA GAEFKALLGDLRKWEQIAGELQSIKDTYPPNDYDVPDVFKQDFPGLPLYQKYQRFLNIRKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43990; Mature: 43859
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIDNAPQLERLLSLVKEGQLTQEEFGVLQAHFDLKITPPPQGTTNQTTAAPESPSTEEK CCCCCCHHHHHHHHHHHCCCCCHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCHHH TADSFWKKPIFGNKSLVEKVTNYFAKPPVPPYSLDRYGQLWKQLETKAITLQGLENRKFG HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCC NQEFLDFFRIRILIDLNMGTFKNLKNTIDLFEVMLFSLESFVLINETEFLYRSPTQLKVY CHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCCCHHHHH EAIADILDNHTDTTEIVLEMKAKVTPFLKEFKTDEGLRVTKNYILAIKEVSRYKSGVKLL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH NILRNLKSRYSLLLSTFKLAQEVLTQPIGTDLEVLEQRVSEIEETVYTLCSAMGMPRNQN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NLLGHVKVFHFLALNYRNKNAGAEFKALLGDLRKWEQIAGELQSIKDTYPPNDYDVPDVF HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH KQDFPGLPLYQKYQRFLNIRKA HHCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure PIDNAPQLERLLSLVKEGQLTQEEFGVLQAHFDLKITPPPQGTTNQTTAAPESPSTEEK CCCCCHHHHHHHHHHHCCCCCHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCHHH TADSFWKKPIFGNKSLVEKVTNYFAKPPVPPYSLDRYGQLWKQLETKAITLQGLENRKFG HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCC NQEFLDFFRIRILIDLNMGTFKNLKNTIDLFEVMLFSLESFVLINETEFLYRSPTQLKVY CHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCCCHHHHH EAIADILDNHTDTTEIVLEMKAKVTPFLKEFKTDEGLRVTKNYILAIKEVSRYKSGVKLL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH NILRNLKSRYSLLLSTFKLAQEVLTQPIGTDLEVLEQRVSEIEETVYTLCSAMGMPRNQN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NLLGHVKVFHFLALNYRNKNAGAEFKALLGDLRKWEQIAGELQSIKDTYPPNDYDVPDVF HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH KQDFPGLPLYQKYQRFLNIRKA HHCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA