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The map label for this gene is yciO [H]

Identifier: 170078316

GI number: 170078316

Start: 1794798

End: 1795469

Strand: Reverse

Name: yciO [H]

Synonym: SYNPCC7002_A1709

Alternate gene names: 170078316

Gene position: 1795469-1794798 (Counterclockwise)

Preceding gene: 170078318

Following gene: 170078311

Centisome position: 59.69

GC content: 53.72

Gene sequence:

>672_bases
ATGGCTAATTATTATTCACTCCACCCGAAAAATCCCCAACAACGGGATTTAGAGGCGATCGCCCAACAACTCCGGGCTGG
GGCCGTGATGTTATATCCAACAGATACAGTGTACGCCATTGGTTGTGATCTCACCGCAAAGCAAGCCGTGCAAAAAGTGC
GCCAACTCAAGCGCCTCGCCAACGATAAACCCCTCACTTTCCTCTGCTCATCCCTGTCGAATATTTCTGAATATGCCCTC
GTCAGTGACGAAGCTTACCGGATTATGAAACGGGCAATTCCTGGCCCCTATACCTTCTTACTTCCCGCCACAAAACAGGT
GCCGAAGCTGGTGATGAGCCCCAAACGCCGCAGCACCGGGATTCGTGTCCCTGACCATGCGATCTGTCAGGGTTTACTCC
AGGCCCTTGGCAATCCGATTATTTCCACCTCGGCCCACTTGCCCGACGAAGATGGTGAACCTTTTACCCTTGGCCTTGAA
AAAGCGCGCCTCTTTGATGCCCTAGAGCCCCTTGTGGATATCATCATCGACAGTGACAGCGAGCCCGGCACCAAAACTTC
AACGATTCTCGACTTTTGCGATCGCCAACCGACCCTCATCCGTAAAGGCCTCGGCTGGGATGCCCTCGAAGGCTGGCTTG
ACGTGGTCGACCTCTCCGACGCCACACAATAA

Upstream 100 bases:

>100_bases
CAGCGGTACGCCCCCATCTATCAATGCACCGAGACACATATCTCCTGCAATCCCCGTCGGGCATTCGAGATAGGCAATTT
TTTTCATAGCGGCAAAAACA

Downstream 100 bases:

>100_bases
ACCCACTATCCTTCCTTGGGGAAGGTGGCCGCTAGGCCGGAAGGGGTTCTGCCTTGGGGAAGGTGGCCAATCTTCTCCCC
TCAAGGGGAGCTAGAGGGGT

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MANYYSLHPKNPQQRDLEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLSNISEYAL
VSDEAYRIMKRAIPGPYTFLLPATKQVPKLVMSPKRRSTGIRVPDHAICQGLLQALGNPIISTSAHLPDEDGEPFTLGLE
KARLFDALEPLVDIIIDSDSEPGTKTSTILDFCDRQPTLIRKGLGWDALEGWLDVVDLSDATQ

Sequences:

>Translated_223_residues
MANYYSLHPKNPQQRDLEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLSNISEYAL
VSDEAYRIMKRAIPGPYTFLLPATKQVPKLVMSPKRRSTGIRVPDHAICQGLLQALGNPIISTSAHLPDEDGEPFTLGLE
KARLFDALEPLVDIIIDSDSEPGTKTSTILDFCDRQPTLIRKGLGWDALEGWLDVVDLSDATQ
>Mature_222_residues
ANYYSLHPKNPQQRDLEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLSNISEYALV
SDEAYRIMKRAIPGPYTFLLPATKQVPKLVMSPKRRSTGIRVPDHAICQGLLQALGNPIISTSAHLPDEDGEPFTLGLEK
ARLFDALEPLVDIIIDSDSEPGTKTSTILDFCDRQPTLIRKGLGWDALEGWLDVVDLSDATQ

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=162, Percent_Identity=32.0987654320988, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=39.5121951219512, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI2367210, Length=142, Percent_Identity=32.3943661971831, Blast_Score=78, Evalue=6e-16,
Organism=Drosophila melanogaster, GI78707274, Length=181, Percent_Identity=25.414364640884, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 24623; Mature: 24491

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANYYSLHPKNPQQRDLEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLA
CCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHC
NDKPLTFLCSSLSNISEYALVSDEAYRIMKRAIPGPYTFLLPATKQVPKLVMSPKRRSTG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCCC
IRVPDHAICQGLLQALGNPIISTSAHLPDEDGEPFTLGLEKARLFDALEPLVDIIIDSDS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
EPGTKTSTILDFCDRQPTLIRKGLGWDALEGWLDVVDLSDATQ
CCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ANYYSLHPKNPQQRDLEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLA
CCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHC
NDKPLTFLCSSLSNISEYALVSDEAYRIMKRAIPGPYTFLLPATKQVPKLVMSPKRRSTG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCCC
IRVPDHAICQGLLQALGNPIISTSAHLPDEDGEPFTLGLEKARLFDALEPLVDIIIDSDS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
EPGTKTSTILDFCDRQPTLIRKGLGWDALEGWLDVVDLSDATQ
CCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]