| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078255
Identifier: 170078255
GI number: 170078255
Start: 1727092
End: 1727565
Strand: Reverse
Name: 170078255
Synonym: SYNPCC7002_A1647
Alternate gene names: NA
Gene position: 1727565-1727092 (Counterclockwise)
Preceding gene: 170078256
Following gene: 170078250
Centisome position: 57.43
GC content: 47.26
Gene sequence:
>474_bases ATGGCAGAGATCAAAATTCCCCAACGCGACATCCTCAGTCTTAATTTGGCCCCCCTGAAAACCCTGGTGCAATCGATCCT GCTCGATGAGGCCCTCGCAGACCATGAGCAAAAGTTTCAGTTAAAGATTGATTTTCCCCAGGAAGCGAATGATCCCCGTG AACTCTCAGAAATCCCAGAAATTCGTCTCTGGTTTGTGCGTCTCGATGCGATCTTTCCTTGGTTTCCGTTCCTCCTCGAC TGGAAAGCAGGGGAATTAGGCCGTTATACGGCGATGCTCGTGCCCCATCAATTTCATCGCACCGAAGGGATTCAATATAA TCCCGAAGCCCTCGAAATTTTTGTGATGAGTAAAGTATTTTGCCTCAGTGAGACTTTACCGAAATTCGGCATTCAACCTC AGTCACGGGTAAAGGCGATCGCCCAATTATTAGGCTACGAACTAGACGACGACTTTTTAAATGATCTCAGCTAA
Upstream 100 bases:
>100_bases TTTTGTCCCAAGGCGAATCGCAAATGCAATTCATGAGCCTTGGAGCACTCAGCGCCCATCTCCAAGCTTTACAATGGGAA AGCTGTTGACCGAAGCAACC
Downstream 100 bases:
>100_bases ATTAAATTCCCGCACCATCTAAATATTGTTGAATTTCTCGGTCAGACAAGCGACAGCTATCTTTGTGATTCTGACGACGG TGGGCTGTTACGAGATCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MAEIKIPQRDILSLNLAPLKTLVQSILLDEALADHEQKFQLKIDFPQEANDPRELSEIPEIRLWFVRLDAIFPWFPFLLD WKAGELGRYTAMLVPHQFHRTEGIQYNPEALEIFVMSKVFCLSETLPKFGIQPQSRVKAIAQLLGYELDDDFLNDLS
Sequences:
>Translated_157_residues MAEIKIPQRDILSLNLAPLKTLVQSILLDEALADHEQKFQLKIDFPQEANDPRELSEIPEIRLWFVRLDAIFPWFPFLLD WKAGELGRYTAMLVPHQFHRTEGIQYNPEALEIFVMSKVFCLSETLPKFGIQPQSRVKAIAQLLGYELDDDFLNDLS >Mature_156_residues AEIKIPQRDILSLNLAPLKTLVQSILLDEALADHEQKFQLKIDFPQEANDPRELSEIPEIRLWFVRLDAIFPWFPFLLDW KAGELGRYTAMLVPHQFHRTEGIQYNPEALEIFVMSKVFCLSETLPKFGIQPQSRVKAIAQLLGYELDDDFLNDLS
Specific function: Unknown
COG id: COG5474
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18212; Mature: 18081
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEIKIPQRDILSLNLAPLKTLVQSILLDEALADHEQKFQLKIDFPQEANDPRELSEIPE CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHCCH IRLWFVRLDAIFPWFPFLLDWKAGELGRYTAMLVPHQFHRTEGIQYNPEALEIFVMSKVF HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHH CLSETLPKFGIQPQSRVKAIAQLLGYELDDDFLNDLS HHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCC >Mature Secondary Structure AEIKIPQRDILSLNLAPLKTLVQSILLDEALADHEQKFQLKIDFPQEANDPRELSEIPE CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHCCH IRLWFVRLDAIFPWFPFLLDWKAGELGRYTAMLVPHQFHRTEGIQYNPEALEIFVMSKVF HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHH CLSETLPKFGIQPQSRVKAIAQLLGYELDDDFLNDLS HHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA