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The map label for this gene is dapF

Identifier: 170078250

GI number: 170078250

Start: 1722380

End: 1723225

Strand: Reverse

Name: dapF

Synonym: SYNPCC7002_A1642

Alternate gene names: 170078250

Gene position: 1723225-1722380 (Counterclockwise)

Preceding gene: 170078255

Following gene: 170078247

Centisome position: 57.29

GC content: 54.61

Gene sequence:

>846_bases
ATGGTGCTGGAATTTACGAAATATCAAGGTCTGGGTAATGATTTTATTCTGCTGGATAATCGCCAGCAGACGACGCCCCT
CGTCACCCCGGAGCAAGCCATTCAACTATGCGATCGCCACTTCGGCATTGGTGCGGACGGTGTGATTTTCGCTCTGCCAG
GCCAGGCTGGTGCCGACTATACCATGCGCATTTTCAATTCCGACGGTTCTGAACCGGAAATGTGCGGCAACGGGATTCGT
TGTTTAGCCCGCTTCATTGACCACCTAGAGGGGGGAAATGCCCCCGGCAAAACCTACAGCATCCATACCCTGGCGGGGAT
GATTCGACCCCGTTTAGAAACTGACGCACTCGTGCGGGTTGATATGGGTGAACCGATTCTCACGGCAACGGATATTCCCA
CCACCCTAAAAGACAGTAATGGCCAAGCCGTTAATCAGCCCCTCGAAGTGGCCGGAAAAACATGGATGGTGACCTGTGTG
AGCATGGGGAACCCCCACTGCATTACCTTTGTCGAAGATGTGGCGGCGATCGCCCTAGAGGTGATTGGTAAAGATTTTGA
GCACCACCCGGCTTTTCCCCAACGGATCAATACCGAGTTTATTGAAGTGGTACGTCCCGACTACATCAAAATGCGGGTCT
GGGAACGGGGCGCGGGGATTACTCTCGCTTGTGGGACAGGGGCCTGTGCGTCGGTGGTGGCTGGGGTCTTAACGGGCCAT
TGCGATCGCCTTTGTACCGTAGAACTACCGGGGGGCTGTCTCCAGATCGAATGGTCAGCAGCAGACAATCACATCTATAT
GACCGGGCCAGCAGCCATTAGCTTCCAGGGTCAAGTGACCCTCTAG

Upstream 100 bases:

>100_bases
ACTTTGACGAAGCTCTGGATGCGACGCACACTCGGATAGCCCGTATTAAATTCTGTCATAATGGCGAATTAACTTTTATT
GATTAGCTTAACCGACAAGT

Downstream 100 bases:

>100_bases
GCACTGGGGGCGATCGGCAAGCGAAACGAAAACGTCGATCCTTCCATCCAACGGCTTTCAATCTCTAGGGCAGTGCCCAT
CTGGTTGAGGTAAGTCTGAC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MVLEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIR
CLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDMGEPILTATDIPTTLKDSNGQAVNQPLEVAGKTWMVTCV
SMGNPHCITFVEDVAAIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLTGH
CDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL

Sequences:

>Translated_281_residues
MVLEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIR
CLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDMGEPILTATDIPTTLKDSNGQAVNQPLEVAGKTWMVTCV
SMGNPHCITFVEDVAAIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLTGH
CDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL
>Mature_281_residues
MVLEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIR
CLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDMGEPILTATDIPTTLKDSNGQAVNQPLEVAGKTWMVTCV
SMGNPHCITFVEDVAAIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLTGH
CDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family

Homologues:

Organism=Escherichia coli, GI87082334, Length=280, Percent_Identity=40.3571428571429, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPF_SYNP2 (B1XP39)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734888.1
- ProteinModelPortal:   B1XP39
- SMR:   B1XP39
- GeneID:   6055880
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1642
- HOGENOM:   HBG399442
- OMA:   HTGIGFD
- ProtClustDB:   PRK00450
- GO:   GO:0005737
- HAMAP:   MF_00197
- InterPro:   IPR001653
- InterPro:   IPR018510
- TIGRFAMs:   TIGR00652

Pfam domain/function: PF01678 DAP_epimerase

EC number: =5.1.1.7

Molecular weight: Translated: 30364; Mature: 30364

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: ACT_SITE 75-75 ACT_SITE 224-224

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADY
CEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCE
TMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRV
EEEEECCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEE
DMGEPILTATDIPTTLKDSNGQAVNQPLEVAGKTWMVTCVSMGNPHCITFVEDVAAIALE
ECCCCEEEECCCCCEEECCCCCCCCCCHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHH
VIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLTGH
HHCCCCCCCCCCCHHCCHHHHHHHCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHCC
CDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL
CCCEEEEECCCCEEEEEEECCCCEEEEECCEEEEECCEEEC
>Mature Secondary Structure
MVLEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADY
CEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCE
TMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRV
EEEEECCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEE
DMGEPILTATDIPTTLKDSNGQAVNQPLEVAGKTWMVTCVSMGNPHCITFVEDVAAIALE
ECCCCEEEECCCCCEEECCCCCCCCCCHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHH
VIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLTGH
HHCCCCCCCCCCCHHCCHHHHHHHCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHCC
CDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL
CCCEEEEECCCCEEEEEEECCCCEEEEECCEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA