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The map label for this gene is ffh [H]

Identifier: 170078230

GI number: 170078230

Start: 1702007

End: 1703443

Strand: Reverse

Name: ffh [H]

Synonym: SYNPCC7002_A1622

Alternate gene names: 170078230

Gene position: 1703443-1702007 (Counterclockwise)

Preceding gene: 170078232

Following gene: 170078229

Centisome position: 56.63

GC content: 51.84

Gene sequence:

>1437_bases
ATGTTTGACGCCCTAGCCGAACGCCTAGAAGATGCCTGGAAATCCCTCCGGGGCCAGGACAAAATCAGCGAATCTAACAT
CAAAGAAGCCTTAAAGGAAGTTCGTCGCGCCCTCCTCGAAGCCGACGTTAACCTCCAGGTGGTCAAGGGCTTTATTTCTG
ATGTGGAAAAAGCGGCAGTCGGTGCAGAAGTTATTTCTGGCGTTAATCCAGGGCAACAGTTCATCAAAATTGTCTACGAC
GAACTCGTCAAAATCATGGGGGAAAGCAACGTTCCCCTCGCCGAAGCAGAAAATAAGCCCTCCGTAATTCTCATGGCCGG
GTTGCAGGGGACGGGGAAAACCACTGCCACCGCCAAACTTTCCCTCTATCTCCGCAAGCAAAATAAAACCGCCCTGATGG
TCGCAACCGACGTTTACCGTCCAGCGGCGATCGATCAGCTGAAAACCCTCGGTGAACAAATTGACGTGCCCGTGTTCGAC
CTGGGCAGTGACGCTAATCCCGTTGACATTGCCAAACAAGGGGTTGAAAAAGCCAAAGAACTCGGTGTTGATGTCGTCCT
CGTGGATACGGCGGGTCGCTTGCAGATCGATGCCGACATGATGGCCGAACTCAAGCAAATTAAAGAAAGCATCAATCCCG
ACGATACATTGCTAGTCGTTGACTCGATGACGGGCCAAGAGGCTGCTAGTTTAACCCGCACTTTCCACGAAGAAATTGGC
GTTACCGGGGCCATTCTCACCAAGATGGATGGGGATACCAGAGGTGGTGCGGCCCTATCTGTGCGAATGATCTCTGGCCA
ACCGATCAAATTTATTGGGGTTGGTGAAAAAGTAGAAGCCCTAGAACCATTCTATCCAGACCGTTTAGCGTCCCGTATCC
TTAACATGGGCGATGTGCTGACCCTCGTCGAAAAGGCCCAGGAAGCCGTTGATCTGTCCGACGTCGAGGAAATGCAGGCC
AAGTTACTCGAAGCCCGCTTTGACTTTGATGACTTTCTCAAGCAGATGCGCCTGTTAAAAAATATGGGCTCCCTGGGCGG
CATGCTGAAGCTCATCCCTGGCATGGGCAACAAGATTGATAAAAATATGCTCGAACAGGGGGAAGTGCAACTGAAGCGCG
TGGAGACCATGATCAACTCCATGACCAAAGAGGAGCGCAAAAATCCGGATGTATTAGCCCAAACGCCCAAGCGTCGTACC
CGTATTGCCAAGGGCTCTGGGTTATCAGAAAAAGATGTCTCAAAACTCATTGCTGACTTTACCCGGATGCGGAAAATGAT
GCAGCAGATGGGTCAAGGGGGAGGTTTACCCGGCATGGGAGGACTCGGTGATCTGTTCGGTGGGGGGATGCCTGGGATGG
GGGGACGTCCCGGTCGTGGTGGCGCACCGAAGAAAAAGAAAAAGGTGAAAAAGAAAAAAGGTTTTGCTGACCTCTAG

Upstream 100 bases:

>100_bases
TGATCGCCCCTGATAAAGAGAGATTGCCGAACCTGCTACAGTCCGCAACTTGGTAAAGTATTTAGACAGTCACTAAACAG
CCCACCCAGAGAAAAGACCT

Downstream 100 bases:

>100_bases
GTTTTCGTTGCTACGATGAATGAAATGGTGCCAAATAAACGGAGATTCGTCCATGGCTAGTTTGTATGAAAAGTTAGGCG
GCGCAGCGGCAGTTGATCTG

Product: signal recognition particle protein

Products: NA

Alternate protein names: Fifty-four homolog [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MFDALAERLEDAWKSLRGQDKISESNIKEALKEVRRALLEADVNLQVVKGFISDVEKAAVGAEVISGVNPGQQFIKIVYD
ELVKIMGESNVPLAEAENKPSVILMAGLQGTGKTTATAKLSLYLRKQNKTALMVATDVYRPAAIDQLKTLGEQIDVPVFD
LGSDANPVDIAKQGVEKAKELGVDVVLVDTAGRLQIDADMMAELKQIKESINPDDTLLVVDSMTGQEAASLTRTFHEEIG
VTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPFYPDRLASRILNMGDVLTLVEKAQEAVDLSDVEEMQA
KLLEARFDFDDFLKQMRLLKNMGSLGGMLKLIPGMGNKIDKNMLEQGEVQLKRVETMINSMTKEERKNPDVLAQTPKRRT
RIAKGSGLSEKDVSKLIADFTRMRKMMQQMGQGGGLPGMGGLGDLFGGGMPGMGGRPGRGGAPKKKKKVKKKKGFADL

Sequences:

>Translated_478_residues
MFDALAERLEDAWKSLRGQDKISESNIKEALKEVRRALLEADVNLQVVKGFISDVEKAAVGAEVISGVNPGQQFIKIVYD
ELVKIMGESNVPLAEAENKPSVILMAGLQGTGKTTATAKLSLYLRKQNKTALMVATDVYRPAAIDQLKTLGEQIDVPVFD
LGSDANPVDIAKQGVEKAKELGVDVVLVDTAGRLQIDADMMAELKQIKESINPDDTLLVVDSMTGQEAASLTRTFHEEIG
VTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPFYPDRLASRILNMGDVLTLVEKAQEAVDLSDVEEMQA
KLLEARFDFDDFLKQMRLLKNMGSLGGMLKLIPGMGNKIDKNMLEQGEVQLKRVETMINSMTKEERKNPDVLAQTPKRRT
RIAKGSGLSEKDVSKLIADFTRMRKMMQQMGQGGGLPGMGGLGDLFGGGMPGMGGRPGRGGAPKKKKKVKKKKGFADL
>Mature_478_residues
MFDALAERLEDAWKSLRGQDKISESNIKEALKEVRRALLEADVNLQVVKGFISDVEKAAVGAEVISGVNPGQQFIKIVYD
ELVKIMGESNVPLAEAENKPSVILMAGLQGTGKTTATAKLSLYLRKQNKTALMVATDVYRPAAIDQLKTLGEQIDVPVFD
LGSDANPVDIAKQGVEKAKELGVDVVLVDTAGRLQIDADMMAELKQIKESINPDDTLLVVDSMTGQEAASLTRTFHEEIG
VTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPFYPDRLASRILNMGDVLTLVEKAQEAVDLSDVEEMQA
KLLEARFDFDDFLKQMRLLKNMGSLGGMLKLIPGMGNKIDKNMLEQGEVQLKRVETMINSMTKEERKNPDVLAQTPKRRT
RIAKGSGLSEKDVSKLIADFTRMRKMMQQMGQGGGLPGMGGLGDLFGGGMPGMGGRPGRGGAPKKKKKVKKKKGFADL

Specific function: Necessary for efficient export of extracytoplasmic proteins. Binds to the signal sequence when it emerges from the ribosomes [H]

COG id: COG0541

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI4507215, Length=445, Percent_Identity=33.4831460674157, Blast_Score=262, Evalue=4e-70,
Organism=Homo sapiens, GI226371618, Length=387, Percent_Identity=32.8165374677003, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI89061728, Length=160, Percent_Identity=36.25, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI295424842, Length=300, Percent_Identity=28.6666666666667, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI23308697, Length=300, Percent_Identity=28, Blast_Score=110, Evalue=3e-24,
Organism=Escherichia coli, GI1788963, Length=427, Percent_Identity=50.5854800936768, Blast_Score=412, Evalue=1e-116,
Organism=Escherichia coli, GI1789874, Length=269, Percent_Identity=33.8289962825279, Blast_Score=156, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17539958, Length=436, Percent_Identity=30.7339449541284, Blast_Score=255, Evalue=4e-68,
Organism=Caenorhabditis elegans, GI193206261, Length=312, Percent_Identity=28.8461538461538, Blast_Score=111, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6325345, Length=453, Percent_Identity=32.4503311258278, Blast_Score=239, Evalue=8e-64,
Organism=Saccharomyces cerevisiae, GI6320498, Length=312, Percent_Identity=24.6794871794872, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI17647949, Length=445, Percent_Identity=31.4606741573034, Blast_Score=239, Evalue=4e-63,
Organism=Drosophila melanogaster, GI24641198, Length=295, Percent_Identity=26.4406779661017, Blast_Score=113, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822
- InterPro:   IPR004780
- InterPro:   IPR004125 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N; PF02978 SRP_SPB [H]

EC number: NA

Molecular weight: Translated: 51849; Mature: 51849

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDALAERLEDAWKSLRGQDKISESNIKEALKEVRRALLEADVNLQVVKGFISDVEKAAV
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GAEVISGVNPGQQFIKIVYDELVKIMGESNVPLAEAENKPSVILMAGLQGTGKTTATAKL
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEE
SLYLRKQNKTALMVATDVYRPAAIDQLKTLGEQIDVPVFDLGSDANPVDIAKQGVEKAKE
EEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHH
LGVDVVLVDTAGRLQIDADMMAELKQIKESINPDDTLLVVDSMTGQEAASLTRTFHEEIG
CCCCEEEEECCCCEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
VTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPFYPDRLASRILNMGDVL
CCHHHHEECCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHCCCCHHHHHHHHHCHHHHH
TLVEKAQEAVDLSDVEEMQAKLLEARFDFDDFLKQMRLLKNMGSLGGMLKLIPGMGNKID
HHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHH
KNMLEQGEVQLKRVETMINSMTKEERKNPDVLAQTPKRRTRIAKGSGLSEKDVSKLIADF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
TRMRKMMQQMGQGGGLPGMGGLGDLFGGGMPGMGGRPGRGGAPKKKKKVKKKKGFADL
HHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFDALAERLEDAWKSLRGQDKISESNIKEALKEVRRALLEADVNLQVVKGFISDVEKAAV
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GAEVISGVNPGQQFIKIVYDELVKIMGESNVPLAEAENKPSVILMAGLQGTGKTTATAKL
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEE
SLYLRKQNKTALMVATDVYRPAAIDQLKTLGEQIDVPVFDLGSDANPVDIAKQGVEKAKE
EEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHH
LGVDVVLVDTAGRLQIDADMMAELKQIKESINPDDTLLVVDSMTGQEAASLTRTFHEEIG
CCCCEEEEECCCCEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
VTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPFYPDRLASRILNMGDVL
CCHHHHEECCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHCCCCHHHHHHHHHCHHHHH
TLVEKAQEAVDLSDVEEMQAKLLEARFDFDDFLKQMRLLKNMGSLGGMLKLIPGMGNKID
HHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHH
KNMLEQGEVQLKRVETMINSMTKEERKNPDVLAQTPKRRTRIAKGSGLSEKDVSKLIADF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
TRMRKMMQQMGQGGGLPGMGGLGDLFGGGMPGMGGRPGRGGAPKKKKKVKKKKGFADL
HHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]