| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078147
Identifier: 170078147
GI number: 170078147
Start: 1622752
End: 1625319
Strand: Reverse
Name: 170078147
Synonym: SYNPCC7002_A1538
Alternate gene names: NA
Gene position: 1625319-1622752 (Counterclockwise)
Preceding gene: 170078152
Following gene: 170078145
Centisome position: 54.03
GC content: 52.88
Gene sequence:
>2568_bases ATGGGATTTAATGGGAAAGGCTGCCATTTCCCGAAGTTTTTTAACCCTTGTTCTATGTCTGCTTCTAAGTCTCCAGCCCC TTTATTGGCCTACTTCACCGCTTTTTTTTACATTCTCTTTAGCCTCATTCCCGATAGCCATAGCATGATGGTGGCCTGGT CATGGGTGTTTGTGTGGCAGGTGGGTCTGTTCTGTCCTTTGTTGTGGTTTTTGGTGCAGCTATGGGATAACCGCCGCCTC TATCTGTTGGGCAACGGGTTTGATCAGGGTCTAATTGCAATTTTAATCAGCTTGGGGATTTCCACCCTGGGGGCAGAATT TCCCCAGCAAGCCCGCTGGCAAGCCTGGGCCTGTTTAGGGTTTATCGCCGCGCTCTACCCCATTAGTCGTTGGCTGAATA GTGTGACTGGTCGTTATCGATTATTTTTGGGACAAGGATATTTAAGTTTGGCCTTCGTTGCTTTTAGTTTGGCGCTGTGG CTGAGTCGGACATTTTTGCCGGAAATTGAGCGGCTCCGGGATTTGGGCGTTGATGGGGCGGTGCAACAGTTTGATTTTTC GCTGCTGGAACTGCGCAACTGGGCTCCCTTGGGTCACCAAAATTATGTGGCCGGTTATCTGATTCTTTGTTTACCAACCC TCCTGGGCTTGGCGATTTTACATCGGGATTGGCGGCGCTGGCTTTGGCTGACGGGGGGGGTGATTGGGGCGGTAGATCTC TATACCACGAGCTCTCGGGGGGGTTGGCTTGGGTTGGCGATCGCCTCGGTGGTGGCCTTCGGGTTTGCTTGGGGGTTTAG TCAGATTCGCAAATTTTACTTAGTGCTGGCGGGAATCATTTCCACAGGGGTTTTAGGGATTTTTGTGCTGACCAATAACC GCCTCTACAATCTCGTGGTGCCGATTTTGCAGGGGGAATTTGGGGAATTAAATTACCGTTGGGTCAATGCCCAGGTGGGT GGGGCCATGGGTCTCGACCATTGGTGGACGGGGGCTGGTTTAGGAAATGCGTTCTTGTTGTATCAAAATTACCGCCCAAT CACAGCGGGTCGCCTTTCGGAAATCATTTATCAACTCCACAGTACCCCGGTGCAACTCTGGGCGGAAATGGGCATCTGGG GCTTGGGTTTGTTCTTTGGTTCGATTGTTTTTCTGGGGGTGATCCTCTGGCGACTGCGGGGCCATGTTAAAGGGATGGCA CGGGAAGACCGCATTTTGTTGGGCAGTATTTATACCGGGCTAGTCGGCTATTGGGCCTTGAGTTGGACCGATTATCAACT GGATAATGTGGCCATTAGCGGCATCATTACAATTCTGGTGGCCCTGCTCGCGGCGATCGCCCGTCAAGATCAACCCCAAA TATCTCTCCCGTTCCAGCCAAACCCAGAAAAATTTTTAGGAAAACCCCGTCTCGTCGCTCTCGGCCTAGTGGGAATTTAC GGTGCCGTTGCCATCTGGTTAGCGCCGATCCAAGCCGCCTGGGAGCGATCCAGCACCGGATTTTTAGCATTGCGCCAGGA AACCCCTGATTATGACCGTTTTGTGGAAAATTTGACCGCCGCCCATGACCTCGCTCCCTGGGAACCTTACTATTCCTATC AGTTGGGTTGGAACCTCGGAGAATTAGCTCTCCAGACCACAGACTTAGAACAACGGCAACACTATCTCCAGGAGGCGATC CAATGGTTTGACCAGGGCAACCAAGCATCTCCCTACCGGGAATTTGGCCGCAGCAACGTGGCCTGGCTCCACATCGCCAA CAATGAACCCAATCTAGCAACGGCGGATTTTTACCAATCGGCCCAGCTTGTGCCCGCGAAACGAGGCATTTTCTACGGGT TGGGGTTAAGTTTGTTGGCCCAGGACAAAACAGATCTTGCGGTCGAGGCGATCGCCTTAGAAATTCTTCGTGATCCCCCA TTTATCACCAGTCCCATTTGGCGAGGCGGGGGCTTGGGAGAGCTTTATCCAGCGGTGGTGGCGCGGGTGATGGGTCACTA CGAACAGCTACTGGCGCAATATCCCGATGATCCGTTGTTACATCGCTGTCGGGGTGGCATCGCCTGGTGGATTGGGGATT TTGCCCTGGCCGAAACGGAATTTCGGCAATATTTCGACGCCACGGCCCTCAGTTTACTCCCCGGTCGGGAGGCCCTGGGT CAGGAAACGGCGATCGCCCTGTTGCAAGCCACCTGGGAAAACCCAGAAAAACGCTTAGAACTTCTAGAGGAAGCCTGGGC TAGGGTTTCGCCCCAACAGCCCCTCACCGACCAACAACGGCAAGAATTTTTAGCCACCATGGCCAATAGTCCAGATTTTG CCACTTGGATTCGCGTCGGTGCCCCAGTCCTCCAGTACCGTCGCCAGCGCAGCGGGTTTAATGTGAACAGTCGCCACATT GACGGGGACAATCCCACGGATTTTTGGACGGTGAGCGAAAACCTCGCAATTAACACCTGGTTCGGCGAATTTTTCCCGTC CGTTGTCTATAAACCTCGGTTTGACTTGCAATTACAGCCCCTCAGGGACAGTCTTTATGCAACCCTCAAAACGGAAATTA ACCCCTAA
Upstream 100 bases:
>100_bases TTTGCCTGTGGTGGCCTTATCAGAGAAAAGAGGCATGGGTTGAGGGGGATGACTTAAAAATCCTATCTATTTTAGCCCAT GGCCATGGGAGTTCTAGAAA
Downstream 100 bases:
>100_bases AAATTGAGCCAATTACTCAAGCCAGCGGGTAACGGCAAGAAAATTAACGCCACAAAAACCAGGGTAAACATCCCCAACAG GTCGCGGCGATTGTCCAAAT
Product: O-antigen polymerase domain-containing protein
Products: NA
Alternate protein names: O-Antigen Polymerase Domain-Containing Protein; O-Antigen Polymerase Family
Number of amino acids: Translated: 855; Mature: 854
Protein sequence:
>855_residues MGFNGKGCHFPKFFNPCSMSASKSPAPLLAYFTAFFYILFSLIPDSHSMMVAWSWVFVWQVGLFCPLLWFLVQLWDNRRL YLLGNGFDQGLIAILISLGISTLGAEFPQQARWQAWACLGFIAALYPISRWLNSVTGRYRLFLGQGYLSLAFVAFSLALW LSRTFLPEIERLRDLGVDGAVQQFDFSLLELRNWAPLGHQNYVAGYLILCLPTLLGLAILHRDWRRWLWLTGGVIGAVDL YTTSSRGGWLGLAIASVVAFGFAWGFSQIRKFYLVLAGIISTGVLGIFVLTNNRLYNLVVPILQGEFGELNYRWVNAQVG GAMGLDHWWTGAGLGNAFLLYQNYRPITAGRLSEIIYQLHSTPVQLWAEMGIWGLGLFFGSIVFLGVILWRLRGHVKGMA REDRILLGSIYTGLVGYWALSWTDYQLDNVAISGIITILVALLAAIARQDQPQISLPFQPNPEKFLGKPRLVALGLVGIY GAVAIWLAPIQAAWERSSTGFLALRQETPDYDRFVENLTAAHDLAPWEPYYSYQLGWNLGELALQTTDLEQRQHYLQEAI QWFDQGNQASPYREFGRSNVAWLHIANNEPNLATADFYQSAQLVPAKRGIFYGLGLSLLAQDKTDLAVEAIALEILRDPP FITSPIWRGGGLGELYPAVVARVMGHYEQLLAQYPDDPLLHRCRGGIAWWIGDFALAETEFRQYFDATALSLLPGREALG QETAIALLQATWENPEKRLELLEEAWARVSPQQPLTDQQRQEFLATMANSPDFATWIRVGAPVLQYRRQRSGFNVNSRHI DGDNPTDFWTVSENLAINTWFGEFFPSVVYKPRFDLQLQPLRDSLYATLKTEINP
Sequences:
>Translated_855_residues MGFNGKGCHFPKFFNPCSMSASKSPAPLLAYFTAFFYILFSLIPDSHSMMVAWSWVFVWQVGLFCPLLWFLVQLWDNRRL YLLGNGFDQGLIAILISLGISTLGAEFPQQARWQAWACLGFIAALYPISRWLNSVTGRYRLFLGQGYLSLAFVAFSLALW LSRTFLPEIERLRDLGVDGAVQQFDFSLLELRNWAPLGHQNYVAGYLILCLPTLLGLAILHRDWRRWLWLTGGVIGAVDL YTTSSRGGWLGLAIASVVAFGFAWGFSQIRKFYLVLAGIISTGVLGIFVLTNNRLYNLVVPILQGEFGELNYRWVNAQVG GAMGLDHWWTGAGLGNAFLLYQNYRPITAGRLSEIIYQLHSTPVQLWAEMGIWGLGLFFGSIVFLGVILWRLRGHVKGMA REDRILLGSIYTGLVGYWALSWTDYQLDNVAISGIITILVALLAAIARQDQPQISLPFQPNPEKFLGKPRLVALGLVGIY GAVAIWLAPIQAAWERSSTGFLALRQETPDYDRFVENLTAAHDLAPWEPYYSYQLGWNLGELALQTTDLEQRQHYLQEAI QWFDQGNQASPYREFGRSNVAWLHIANNEPNLATADFYQSAQLVPAKRGIFYGLGLSLLAQDKTDLAVEAIALEILRDPP FITSPIWRGGGLGELYPAVVARVMGHYEQLLAQYPDDPLLHRCRGGIAWWIGDFALAETEFRQYFDATALSLLPGREALG QETAIALLQATWENPEKRLELLEEAWARVSPQQPLTDQQRQEFLATMANSPDFATWIRVGAPVLQYRRQRSGFNVNSRHI DGDNPTDFWTVSENLAINTWFGEFFPSVVYKPRFDLQLQPLRDSLYATLKTEINP >Mature_854_residues GFNGKGCHFPKFFNPCSMSASKSPAPLLAYFTAFFYILFSLIPDSHSMMVAWSWVFVWQVGLFCPLLWFLVQLWDNRRLY LLGNGFDQGLIAILISLGISTLGAEFPQQARWQAWACLGFIAALYPISRWLNSVTGRYRLFLGQGYLSLAFVAFSLALWL SRTFLPEIERLRDLGVDGAVQQFDFSLLELRNWAPLGHQNYVAGYLILCLPTLLGLAILHRDWRRWLWLTGGVIGAVDLY TTSSRGGWLGLAIASVVAFGFAWGFSQIRKFYLVLAGIISTGVLGIFVLTNNRLYNLVVPILQGEFGELNYRWVNAQVGG AMGLDHWWTGAGLGNAFLLYQNYRPITAGRLSEIIYQLHSTPVQLWAEMGIWGLGLFFGSIVFLGVILWRLRGHVKGMAR EDRILLGSIYTGLVGYWALSWTDYQLDNVAISGIITILVALLAAIARQDQPQISLPFQPNPEKFLGKPRLVALGLVGIYG AVAIWLAPIQAAWERSSTGFLALRQETPDYDRFVENLTAAHDLAPWEPYYSYQLGWNLGELALQTTDLEQRQHYLQEAIQ WFDQGNQASPYREFGRSNVAWLHIANNEPNLATADFYQSAQLVPAKRGIFYGLGLSLLAQDKTDLAVEAIALEILRDPPF ITSPIWRGGGLGELYPAVVARVMGHYEQLLAQYPDDPLLHRCRGGIAWWIGDFALAETEFRQYFDATALSLLPGREALGQ ETAIALLQATWENPEKRLELLEEAWARVSPQQPLTDQQRQEFLATMANSPDFATWIRVGAPVLQYRRQRSGFNVNSRHID GDNPTDFWTVSENLAINTWFGEFFPSVVYKPRFDLQLQPLRDSLYATLKTEINP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 96444; Mature: 96313
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFNGKGCHFPKFFNPCSMSASKSPAPLLAYFTAFFYILFSLIPDSHSMMVAWSWVFVWQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VGLFCPLLWFLVQLWDNRRLYLLGNGFDQGLIAILISLGISTLGAEFPQQARWQAWACLG HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH FIAALYPISRWLNSVTGRYRLFLGQGYLSLAFVAFSLALWLSRTFLPEIERLRDLGVDGA HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH VQQFDFSLLELRNWAPLGHQNYVAGYLILCLPTLLGLAILHRDWRRWLWLTGGVIGAVDL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE YTTSSRGGWLGLAIASVVAFGFAWGFSQIRKFYLVLAGIISTGVLGIFVLTNNRLYNLVV EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEHHH PILQGEFGELNYRWVNAQVGGAMGLDHWWTGAGLGNAFLLYQNYRPITAGRLSEIIYQLH HHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH STPVQLWAEMGIWGLGLFFGSIVFLGVILWRLRGHVKGMAREDRILLGSIYTGLVGYWAL CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHH SWTDYQLDNVAISGIITILVALLAAIARQDQPQISLPFQPNPEKFLGKPRLVALGLVGIY CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHCCCCHHHHHHHHHHH GAVAIWLAPIQAAWERSSTGFLALRQETPDYDRFVENLTAAHDLAPWEPYYSYQLGWNLG HHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHH ELALQTTDLEQRQHYLQEAIQWFDQGNQASPYREFGRSNVAWLHIANNEPNLATADFYQS HHHEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEECCCCCCEEHHHHHC AQLVPAKRGIFYGLGLSLLAQDKTDLAVEAIALEILRDPPFITSPIWRGGGLGELYPAVV CCCCCHHCCCHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH ARVMGHYEQLLAQYPDDPLLHRCRGGIAWWIGDFALAETEFRQYFDATALSLLPGREALG HHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC QETAIALLQATWENPEKRLELLEEAWARVSPQQPLTDQQRQEFLATMANSPDFATWIRVG HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHC APVLQYRRQRSGFNVNSRHIDGDNPTDFWTVSENLAINTWFGEFFPSVVYKPRFDLQLQP HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHCCCCCCCEECC LRDSLYATLKTEINP HHHHHHHHHHCCCCC >Mature Secondary Structure GFNGKGCHFPKFFNPCSMSASKSPAPLLAYFTAFFYILFSLIPDSHSMMVAWSWVFVWQ CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VGLFCPLLWFLVQLWDNRRLYLLGNGFDQGLIAILISLGISTLGAEFPQQARWQAWACLG HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH FIAALYPISRWLNSVTGRYRLFLGQGYLSLAFVAFSLALWLSRTFLPEIERLRDLGVDGA HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH VQQFDFSLLELRNWAPLGHQNYVAGYLILCLPTLLGLAILHRDWRRWLWLTGGVIGAVDL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE YTTSSRGGWLGLAIASVVAFGFAWGFSQIRKFYLVLAGIISTGVLGIFVLTNNRLYNLVV EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEHHH PILQGEFGELNYRWVNAQVGGAMGLDHWWTGAGLGNAFLLYQNYRPITAGRLSEIIYQLH HHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH STPVQLWAEMGIWGLGLFFGSIVFLGVILWRLRGHVKGMAREDRILLGSIYTGLVGYWAL CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHH SWTDYQLDNVAISGIITILVALLAAIARQDQPQISLPFQPNPEKFLGKPRLVALGLVGIY CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHCCCCHHHHHHHHHHH GAVAIWLAPIQAAWERSSTGFLALRQETPDYDRFVENLTAAHDLAPWEPYYSYQLGWNLG HHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHH ELALQTTDLEQRQHYLQEAIQWFDQGNQASPYREFGRSNVAWLHIANNEPNLATADFYQS HHHEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEECCCCCCEEHHHHHC AQLVPAKRGIFYGLGLSLLAQDKTDLAVEAIALEILRDPPFITSPIWRGGGLGELYPAVV CCCCCHHCCCHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH ARVMGHYEQLLAQYPDDPLLHRCRGGIAWWIGDFALAETEFRQYFDATALSLLPGREALG HHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC QETAIALLQATWENPEKRLELLEEAWARVSPQQPLTDQQRQEFLATMANSPDFATWIRVG HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHC APVLQYRRQRSGFNVNSRHIDGDNPTDFWTVSENLAINTWFGEFFPSVVYKPRFDLQLQP HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHCCCCCCCEECC LRDSLYATLKTEINP HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA