| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078127
Identifier: 170078127
GI number: 170078127
Start: 1604975
End: 1605394
Strand: Direct
Name: 170078127
Synonym: SYNPCC7002_A1518
Alternate gene names: NA
Gene position: 1604975-1605394 (Clockwise)
Preceding gene: 170078126
Following gene: 170078128
Centisome position: 53.36
GC content: 52.38
Gene sequence:
>420_bases GTGTCCTCCAGTATTCCGACCCCCCAGGCCACAGCCATTTTTCAACAAGCTGCCATTCCTGAGAACCGTCTCCACATCGA TCACCGCGCCATCGATACCGTCACCAATTTCACCACCCTCGTCAAAGACTTTAGTGATCGCCATATCCAGCACGTTTACC TAATCACCTCTGATTTTCATATGCGTCGTGCCCAGGCGATCGCCTTCTTTGTTTTCGGCAGTCGCGGCATTATCACCACC CCCATCCCCATTCCCTCCAACCAACCTAACGAAACCCTCTGGCATGTCTCCCGTGATATCGGGCGAGCAATCCTCTGGAT CATCACCGGCCGTACCGGAGTCAGCCTACATCCCCAGTTGGGAGCAGCATTTCCTTCAAGCAGCTGTACATATTTCACCA AGTCAGAAAGGTTAAAATGA
Upstream 100 bases:
>100_bases CGCACCGACCCCCTAAGCCATCCTGACCCTGGGCGGAGACTCTAGACGGGAAGCCTTCACCGCCTCCTTTGCCCAACAGC ACCCAACCCTCGGCATTTGG
Downstream 100 bases:
>100_bases AACCATGATAGGCTTTCTGGCGCTACTGCCCCGTGCCCTCACCACCTTTCTCTATGCCGTTGCTGCCCTCCTGAGGTTCT ATGCCGACACCGACACAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MSSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFHMRRAQAIAFFVFGSRGIITT PIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQLGAAFPSSSCTYFTKSERLK
Sequences:
>Translated_139_residues MSSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFHMRRAQAIAFFVFGSRGIITT PIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQLGAAFPSSSCTYFTKSERLK >Mature_138_residues SSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFHMRRAQAIAFFVFGSRGIITTP IPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQLGAAFPSSSCTYFTKSERLK
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15601; Mature: 15470
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFH CCCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH MRRAQAIAFFVFGSRGIITTPIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQL HHHHHEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEECCCC GAAFPSSSCTYFTKSERLK CCCCCCCCCEEECCCCCCC >Mature Secondary Structure SSSIPTPQATAIFQQAAIPENRLHIDHRAIDTVTNFTTLVKDFSDRHIQHVYLITSDFH CCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH MRRAQAIAFFVFGSRGIITTPIPIPSNQPNETLWHVSRDIGRAILWIITGRTGVSLHPQL HHHHHEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCEECCCC GAAFPSSSCTYFTKSERLK CCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA