| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078089
Identifier: 170078089
GI number: 170078089
Start: 1557436
End: 1558617
Strand: Direct
Name: 170078089
Synonym: SYNPCC7002_A1480
Alternate gene names: NA
Gene position: 1557436-1558617 (Clockwise)
Preceding gene: 170078088
Following gene: 170078093
Centisome position: 51.78
GC content: 53.55
Gene sequence:
>1182_bases ATGCAAAAATTTTACTATTACACCCTCCCCGCCACGGCCTTTGTTTTCAGTGCGATCGCCGCCTATCAGTTTTTTGGGAA CCGCACCACCGCCAGTATTCAGCCCTCGCCGCCCCAACCGGGCTTTGGTGCTGTTTTAAAACAAACCCCAACTGAACCTG AGCCGAGTCTTCCTACCCCAGAGCCAGGGATCACTCCACCAATCCCCGTGGCGATCGCCCGCACGGTGACTGGATCGGAA AAAGCCAGTATTTTTCAGCGGGTGGTGGATCAGCAAGCCAGCCTTGGCCTCTGCCTGGACAACGATAATTTGGCTGCGAA TCTCGATGATGCGGCGGTGTATCAACAGGGCGAAGATCAATATTTGGTGAGTGTGCTGTGCTTTATGGCGGCCTACCAAG GAGCCTATGAGTTTGTTTATGTTGACGGTGAAACCATCACCCATTCCCGCTTGGCCCTCGCTGGCTTTCCCACCTTTGAC CCAGAAACTAGCGTTCTCAGCAATGGCTATAAATTTAACGGCGCAGGAACTTGCCTAGAGGACTCTGAATATTATTGGGA TGGCTATAGCCTGCGGCTTGTCTCTGCTAGTTTGATCGATGGCGTCCCCAATGGCTGTGCGGATCTCGGCGTGCGATCGC CCAGTGCAGATTATCTAATTACCGCCGAGGGGGTCGGGCCTGCCCGTCTAGGAATGACTTTTAGAGAGTTCAAAGCCCAA CTTCCCGAAGCGGCCACCTTGGAAGCCGTGCCTTTGGGGGTTGATCTGCCCACCGGCTGGCAAGTAAATCTCTATGGCGC AGCCCAGTTTGTGGTGGCCTTTGATGGGGACAGTGGTGACAATCTCCCCGGTGACCAGGACAAAATTATTCGGATTATGG TGGACAATCCCAGCTACCGTACCGCGGCAGGAGTTGGCCCTGGCACTCTCCTATCCGAGGCGATCGCCGCCTATGGCCCT GCAACCCTCAGCTACAGCACAGAAAATGAAAGTCGAGAATTGATTCAATTTGCCGACTCCCCTTTCAACACTGACCAAAC ATCCTGGCTCTTTTTCCGCTCGAATCAATGGACCCTAAGCGATTACGCAGGTATTTATCCTGATCGCCAAGACAGCTATC AAACGACCACCCAATACGAAGACCATGCCGCCATCGGCTCCATTTGGCTGACCCAATATTGA
Upstream 100 bases:
>100_bases GGGTTCCCAGACCTATTCTGCGCAACTCTGTCTCTAGCGTTTTTTTTGGCTGGAATGTTTGACTGAAATTTAAAGTGATT ACCCAGGAGCCCTGCCCACC
Downstream 100 bases:
>100_bases TTGAGGGACTACTCTTGAATTTTTAAGACGGTCACTAAATTCAGGGCCTGAAGCTGGGAATAAATGAGCAGATTGGAGAT GAGAGACGTGACAATGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MQKFYYYTLPATAFVFSAIAAYQFFGNRTTASIQPSPPQPGFGAVLKQTPTEPEPSLPTPEPGITPPIPVAIARTVTGSE KASIFQRVVDQQASLGLCLDNDNLAANLDDAAVYQQGEDQYLVSVLCFMAAYQGAYEFVYVDGETITHSRLALAGFPTFD PETSVLSNGYKFNGAGTCLEDSEYYWDGYSLRLVSASLIDGVPNGCADLGVRSPSADYLITAEGVGPARLGMTFREFKAQ LPEAATLEAVPLGVDLPTGWQVNLYGAAQFVVAFDGDSGDNLPGDQDKIIRIMVDNPSYRTAAGVGPGTLLSEAIAAYGP ATLSYSTENESRELIQFADSPFNTDQTSWLFFRSNQWTLSDYAGIYPDRQDSYQTTTQYEDHAAIGSIWLTQY
Sequences:
>Translated_393_residues MQKFYYYTLPATAFVFSAIAAYQFFGNRTTASIQPSPPQPGFGAVLKQTPTEPEPSLPTPEPGITPPIPVAIARTVTGSE KASIFQRVVDQQASLGLCLDNDNLAANLDDAAVYQQGEDQYLVSVLCFMAAYQGAYEFVYVDGETITHSRLALAGFPTFD PETSVLSNGYKFNGAGTCLEDSEYYWDGYSLRLVSASLIDGVPNGCADLGVRSPSADYLITAEGVGPARLGMTFREFKAQ LPEAATLEAVPLGVDLPTGWQVNLYGAAQFVVAFDGDSGDNLPGDQDKIIRIMVDNPSYRTAAGVGPGTLLSEAIAAYGP ATLSYSTENESRELIQFADSPFNTDQTSWLFFRSNQWTLSDYAGIYPDRQDSYQTTTQYEDHAAIGSIWLTQY >Mature_393_residues MQKFYYYTLPATAFVFSAIAAYQFFGNRTTASIQPSPPQPGFGAVLKQTPTEPEPSLPTPEPGITPPIPVAIARTVTGSE KASIFQRVVDQQASLGLCLDNDNLAANLDDAAVYQQGEDQYLVSVLCFMAAYQGAYEFVYVDGETITHSRLALAGFPTFD PETSVLSNGYKFNGAGTCLEDSEYYWDGYSLRLVSASLIDGVPNGCADLGVRSPSADYLITAEGVGPARLGMTFREFKAQ LPEAATLEAVPLGVDLPTGWQVNLYGAAQFVVAFDGDSGDNLPGDQDKIIRIMVDNPSYRTAAGVGPGTLLSEAIAAYGP ATLSYSTENESRELIQFADSPFNTDQTSWLFFRSNQWTLSDYAGIYPDRQDSYQTTTQYEDHAAIGSIWLTQY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42631; Mature: 42631
Theoretical pI: Translated: 3.94; Mature: 3.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKFYYYTLPATAFVFSAIAAYQFFGNRTTASIQPSPPQPGFGAVLKQTPTEPEPSLPTP CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCC EPGITPPIPVAIARTVTGSEKASIFQRVVDQQASLGLCLDNDNLAANLDDAAVYQQGEDQ CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCHHHHHHCCCCH YLVSVLCFMAAYQGAYEFVYVDGETITHSRLALAGFPTFDPETSVLSNGYKFNGAGTCLE HHHHHHHHHHHHCCCEEEEEECCCEEECCEEEEECCCCCCCCHHHHHCCEEECCCCCEEE DSEYYWDGYSLRLVSASLIDGVPNGCADLGVRSPSADYLITAEGVGPARLGMTFREFKAQ CCCEEECCEEEEEEEEHHHCCCCCCHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHH LPEAATLEAVPLGVDLPTGWQVNLYGAAQFVVAFDGDSGDNLPGDQDKIIRIMVDNPSYR CCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCC TAAGVGPGTLLSEAIAAYGPATLSYSTENESRELIQFADSPFNTDQTSWLFFRSNQWTLS EECCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCCEEHH DYAGIYPDRQDSYQTTTQYEDHAAIGSIWLTQY HCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure MQKFYYYTLPATAFVFSAIAAYQFFGNRTTASIQPSPPQPGFGAVLKQTPTEPEPSLPTP CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCC EPGITPPIPVAIARTVTGSEKASIFQRVVDQQASLGLCLDNDNLAANLDDAAVYQQGEDQ CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCHHHHHHCCCCH YLVSVLCFMAAYQGAYEFVYVDGETITHSRLALAGFPTFDPETSVLSNGYKFNGAGTCLE HHHHHHHHHHHHCCCEEEEEECCCEEECCEEEEECCCCCCCCHHHHHCCEEECCCCCEEE DSEYYWDGYSLRLVSASLIDGVPNGCADLGVRSPSADYLITAEGVGPARLGMTFREFKAQ CCCEEECCEEEEEEEEHHHCCCCCCHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHH LPEAATLEAVPLGVDLPTGWQVNLYGAAQFVVAFDGDSGDNLPGDQDKIIRIMVDNPSYR CCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCC TAAGVGPGTLLSEAIAAYGPATLSYSTENESRELIQFADSPFNTDQTSWLFFRSNQWTLS EECCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCCEEHH DYAGIYPDRQDSYQTTTQYEDHAAIGSIWLTQY HCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA