Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

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The map label for this gene is 170078088

Identifier: 170078088

GI number: 170078088

Start: 1556470

End: 1557372

Strand: Direct

Name: 170078088

Synonym: SYNPCC7002_A1479

Alternate gene names: NA

Gene position: 1556470-1557372 (Clockwise)

Preceding gene: 170078086

Following gene: 170078089

Centisome position: 51.74

GC content: 52.38

Gene sequence:

>903_bases
ATGATGAACAAAAAATTAGTTGGCAATTGTTTAATGATCGCTGGGGCGATCGCCCTTGGGGGAATTGGCATTTCACGACA
GTTACCACCGGCCACCAGCCAAGGGGTTTGTCGGAATACGAATGATTTAAGCGCCGTTGATGCAACCCGTATTGTTAAGT
TCGAGCAATTTGGTATCCAACTGGAAATTCCCCGAAATTTCCGGACGATGCTCCGCAATGATGGCAGCATTTCAATCCTC
AGGCCGGGAGATTTTAATTTGATTCGTTGCCTTGCCCAAGGAACCCCCGTGCTAGGGACAGATGCCATTTATCCCCAGAC
CCTCCGGCGGCAACCCAACCCCCAAAATTTAACCCTCCAAGAGTTTGCCCAGGGGCGCACCGTGGGGCCAAATCCGAAGG
TCAGTCGGGCATCAATTAATGGCATTGATGTGGTTTTTGCGGAAATTCAAAGCCAGTTTGATGTGGCCTATGGTTGGTAC
GAAGCGCCGGATGTGCCGGGGATCGTTGAGGTGCAAAGCGTGAACAAGGCGTCTTTGGTGAATTTATTTGATCAGGCGAC
GTTATTGGCCCAGACGAGCGAGCCACTCCTATTTGCTAACAACCAGGGGGCGGCCCAAGATCCGCTCATGGTGGCTTTGG
CAACGGCAAAAGGCCTTGGTTACACTCCAGAGAGTTTTCGGGTCAGCATCGAACGACAAAACGATACGGTGGAAAACCCC
CAACGCTCTACGGTGACGATCACCCAAGAAGGTCTGTTGGATGATTCGGTGCGGGGGCAACGGTTTACGATTTCCCTCAA
TAAAAATGCCAATGGCACCTGGACGGTCAGCGATCGCCAAGTGACCTGGCGCTGTCAACCGGGTCGGGGTTCCCAGACCT
ATTCTGCGCAACTCTGTCTCTAG

Upstream 100 bases:

>100_bases
TTAGTAAACGAGAAAAACTTTTTTGGCTTGGGATCGTCGGTGTAAATAAATCTCCGAATTTTAAATCTGTTGAAGTCAGA
AGGTTATCGGCAAAGGTGTG

Downstream 100 bases:

>100_bases
CGTTTTTTTTGGCTGGAATGTTTGACTGAAATTTAAAGTGATTACCCAGGAGCCCTGCCCACCATGCAAAAATTTTACTA
TTACACCCTCCCCGCCACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MMNKKLVGNCLMIAGAIALGGIGISRQLPPATSQGVCRNTNDLSAVDATRIVKFEQFGIQLEIPRNFRTMLRNDGSISIL
RPGDFNLIRCLAQGTPVLGTDAIYPQTLRRQPNPQNLTLQEFAQGRTVGPNPKVSRASINGIDVVFAEIQSQFDVAYGWY
EAPDVPGIVEVQSVNKASLVNLFDQATLLAQTSEPLLFANNQGAAQDPLMVALATAKGLGYTPESFRVSIERQNDTVENP
QRSTVTITQEGLLDDSVRGQRFTISLNKNANGTWTVSDRQVTWRCQPGRGSQTYSAQLCL

Sequences:

>Translated_300_residues
MMNKKLVGNCLMIAGAIALGGIGISRQLPPATSQGVCRNTNDLSAVDATRIVKFEQFGIQLEIPRNFRTMLRNDGSISIL
RPGDFNLIRCLAQGTPVLGTDAIYPQTLRRQPNPQNLTLQEFAQGRTVGPNPKVSRASINGIDVVFAEIQSQFDVAYGWY
EAPDVPGIVEVQSVNKASLVNLFDQATLLAQTSEPLLFANNQGAAQDPLMVALATAKGLGYTPESFRVSIERQNDTVENP
QRSTVTITQEGLLDDSVRGQRFTISLNKNANGTWTVSDRQVTWRCQPGRGSQTYSAQLCL
>Mature_300_residues
MMNKKLVGNCLMIAGAIALGGIGISRQLPPATSQGVCRNTNDLSAVDATRIVKFEQFGIQLEIPRNFRTMLRNDGSISIL
RPGDFNLIRCLAQGTPVLGTDAIYPQTLRRQPNPQNLTLQEFAQGRTVGPNPKVSRASINGIDVVFAEIQSQFDVAYGWY
EAPDVPGIVEVQSVNKASLVNLFDQATLLAQTSEPLLFANNQGAAQDPLMVALATAKGLGYTPESFRVSIERQNDTVENP
QRSTVTITQEGLLDDSVRGQRFTISLNKNANGTWTVSDRQVTWRCQPGRGSQTYSAQLCL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32713; Mature: 32713

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNKKLVGNCLMIAGAIALGGIGISRQLPPATSQGVCRNTNDLSAVDATRIVKFEQFGIQ
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEHHCEE
LEIPRNFRTMLRNDGSISILRPGDFNLIRCLAQGTPVLGTDAIYPQTLRRQPNPQNLTLQ
EEECHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCHH
EFAQGRTVGPNPKVSRASINGIDVVFAEIQSQFDVAYGWYEAPDVPGIVEVQSVNKASLV
HHHCCCCCCCCCCCCEEECCCCEEEEEHHHHHCCEEECEECCCCCCCEEEEECCCHHHHH
NLFDQATLLAQTSEPLLFANNQGAAQDPLMVALATAKGLGYTPESFRVSIERQNDTVENP
HHHHHHHEEEECCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHEEEEEEECCCCCCCC
QRSTVTITQEGLLDDSVRGQRFTISLNKNANGTWTVSDRQVTWRCQPGRGSQTYSAQLCL
CCCEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECCEEEEEECCCCCCCCEEEEECC
>Mature Secondary Structure
MMNKKLVGNCLMIAGAIALGGIGISRQLPPATSQGVCRNTNDLSAVDATRIVKFEQFGIQ
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEHHCEE
LEIPRNFRTMLRNDGSISILRPGDFNLIRCLAQGTPVLGTDAIYPQTLRRQPNPQNLTLQ
EEECHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCHH
EFAQGRTVGPNPKVSRASINGIDVVFAEIQSQFDVAYGWYEAPDVPGIVEVQSVNKASLV
HHHCCCCCCCCCCCCEEECCCCEEEEEHHHHHCCEEECEECCCCCCCEEEEECCCHHHHH
NLFDQATLLAQTSEPLLFANNQGAAQDPLMVALATAKGLGYTPESFRVSIERQNDTVENP
HHHHHHHEEEECCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHEEEEEEECCCCCCCC
QRSTVTITQEGLLDDSVRGQRFTISLNKNANGTWTVSDRQVTWRCQPGRGSQTYSAQLCL
CCCEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECCEEEEEECCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA