| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is uvrA [H]
Identifier: 170078077
GI number: 170078077
Start: 1544064
End: 1546889
Strand: Reverse
Name: uvrA [H]
Synonym: SYNPCC7002_A1468
Alternate gene names: 170078077
Gene position: 1546889-1544064 (Counterclockwise)
Preceding gene: 170078078
Following gene: 170078076
Centisome position: 51.43
GC content: 48.8
Gene sequence:
>2826_bases ATGAGCAAATCTGACCAAATCCGCATCCGTGGCGCAAGACAGCACAACCTTAAAAATGTGGATCTCGATTTGCCGCGTAA CCAGTTGATTGTGTTTACGGGGGTGTCGGGTTCGGGGAAGTCGTCCCTAGCGTTTGACACGATTTTTGCGGAGGGACAGC GCCGTTATGTAGAATCCCTCAGTGCTTACGCCCGCCAGTTTTTGGGGCAGTTGGATAAACCTGATGTGGACGCGATTGAA GGTTTGAGTCCAGCGATCTCCATTGACCAAAAATCCACCTCCCATAACCCCCGCTCCACCGTCGGCACGGTCACGGAAAT TGCCGATTATCTGCGGTTACTCTTCGGGCGGGCGGGAGAGCCCCACTGTCCCCACTGCGATCGCCCGATTGCGCCCCAGA CCATCGATGAGATGTGTGATCGGGTGTTGACATTGCCGGATCGAACGAAATTTCAGTTGCTTGCACCGATTGTGCGTCAC CAAAAGGGAACCCATAAAAAGACCCTTTCTAGTATTGCCGCCGAAGGGTTTGCCCGGGTGAGAATTAATGGCGAAACCCG TGAACTCAGTGACAATATCACCCTCAATAAAAATCACTATCACACCATTGAAATTGTGGTGGATCGTCTGGTGAAAAAAG AGGGAATTCAAGAGCGTTTAGTGGATTCTTTGAGTACCTGTTTAAAACATTCCGAAGGAACAGCAATTGTTGATTTAATT GAGACGGGTGAACAGATTATTTTTTCCGAAAATTTTGCTTGCCCCGAACATGGCGCAGTCATGGAAGAGTTATCCCCCCG TTTGTTTTCTTTTAACTCCCCCTATGGCGCTTGTCCCGCTTGCCACGGGCTAGGCAGTCATCGCCGTTTTTCCCCTGATC TCGTCATTCCCGACCCAAAACAACCCCTCTATGCGGCGATCGCCCCTTGGTCAGAAAAGGAAAATACCTATTATTTATCA TTGCTGTATAACCTCGGACAAAACTTTGGTTTTGAGATCCAAACGCCGTGGGAAAAACTCAAAAAAGAACACCAAGAAAT TTTACTCCATGGCACCGAAGAACCGATTTGGTTTGAGGAGGAATCTCGCTATGGGGGTGGCAAAGGTTACTATCGCCATT ATTCGGGAATTTTAAAACTATTAGAACGCAATTATGAAGATACAAATTCCGATGCGATCAAAGATAAACTGGAAAAATAT TTAATTAATCAACCCTGCGAAGTTTGTCAAGGAAAACGCCTTAAACCGGAAGCTTTGTCGGTGCATTTAGGGCAATATAA TATCGATGAACTGACCAGCGTTGCCATTCGGGACTGTCTCGAACGGGTCGAAAATCTAGAGTTGAGCGATCGCCAAAAAT TGATCGGGGAATTAGCCCTAAAGGAAATTCGGGCGCGGTTACAATTCCTGCTGGATGTCGGCTTGGATTACCTCACCCTT GATCGGGCGGCGATGACCCTCTCCGGCGGCGAAGCCCAGCGCATCCGCCTTGCCACCCAGATCGGCGCAGGGCTAACGGG GGTGTTGTATGTACTCGACGAACCCAGTATCGGCCTCCACCAGCGGGACAATGAGCGACTGTTGCAAACCCTCAAAAAAT TGCGGGATCTCGGCAATACTTTAATTGTGGTCGAACATGACGAGGACACGATCCGCACCGCCGATCACATTATTGATATT GGGCCAAAAGCGGGGGTACATGGCGGCGAAATCGTCTTTCAGGGCAGCTTTGACAAGTTTCTGAAGAACAAAAAATCCCT CACCAGCGCTTATCTGTCCGGCAGACGGGCGATCGCCACGCCCCCAGAGCGACGGGAAGGCAACGGCGGCAGATTACGCC TCGAAAATTGCACGAAAAATAATCTCAAAAATATCACCGTAGAAATTCCCCTCGGCAAATTGGTGTCAGTGACGGGGGTT TCCGGTTCGGGGAAATCGACCCTGATGAATGAATTGCTTTATCCGGCGTTGCAACATAGCCTCAATCGGAATGTGCCTTT TCCCAAGGAGTTGGGCGGTGTCAAAGGCTTAAAATCCATTGATAAGGTGATCGTCATTGATCAATCTCCCATCGGCAGAA CCCCCCGATCCAATCCAGCGACCTATACGGGCATTTTTGATCCGATTCGGAATTTATTTGCCGAGACTGTAGAGGCGAAA ACGAGGGGTTATAAAAAAGGACGGTTTTCGTTCAACGTGAAAGGCGGACGGTGTGAAGCTTGTGGTGGTCAAGGAGTAAA TGTGATCGAGATGAATTTCTTGCCGGATGTCTATGTGCAGTGTGAGGTATGCAAGGGGGCACGCTATAACCGTGAAACGC TTCAGGTGAAATTTAAGGGCTATTCCATTTCGGATGTGTTGAATATGACGGTGGAGGAAGCCCTCGAAGTTTTTGAAAAT ATTACGACGGCGGCAAATCGCTTGCAAACGTTGGTGGATGTGGGCTTGGGTTATATTCGCTTGGGACAACCAGCACCGAC CCTCTCCGGCGGAGAAGCACAACGGGTGAAACTGGCTTCGGAATTGTCGCGGCGGGCAACGGGTAAAACCCTCTATTTGA TTGACGAACCAACGACGGGTTTATCGTTTTACGATGTGCATCATCTGTTAAATGTGTTGCAACGGCTGGTGGATAAAGGA AATTCTGTCCTCGTCATTGAGCATAATTTGGATGTGATTCGCTGTAGTGATTGGCTGATTGATCTAGGGCCAGAGGGTGG CGATCGCGGTGGAGAGATTATTGCGACGGGTACACCGGAGGATTTAATTAAAGTCAAAGAATCCTATACAGGTAAATTCC TCAAACCGCTATTAACGAAGAAATAA
Upstream 100 bases:
>100_bases GTTTTGCTGCTGAGGATCTGGCCTGGAAAGGGTTCTGAAATTCTCGACAGGTCTATTTATAATGTTTAGGCACTTTTCTC GAAATTGGCGATCGCCCCCC
Downstream 100 bases:
>100_bases TAAACGGTGATCGCTCTCCTGACTTCTTCTTTATATTTAAAGTTTTTTGTGTTTTTGATAAGATGAAATATGTTTTTTGA ATCAGTCGGTCATTGTAAAC
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 941; Mature: 940
Protein sequence:
>941_residues MSKSDQIRIRGARQHNLKNVDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQLDKPDVDAIE GLSPAISIDQKSTSHNPRSTVGTVTEIADYLRLLFGRAGEPHCPHCDRPIAPQTIDEMCDRVLTLPDRTKFQLLAPIVRH QKGTHKKTLSSIAAEGFARVRINGETRELSDNITLNKNHYHTIEIVVDRLVKKEGIQERLVDSLSTCLKHSEGTAIVDLI ETGEQIIFSENFACPEHGAVMEELSPRLFSFNSPYGACPACHGLGSHRRFSPDLVIPDPKQPLYAAIAPWSEKENTYYLS LLYNLGQNFGFEIQTPWEKLKKEHQEILLHGTEEPIWFEEESRYGGGKGYYRHYSGILKLLERNYEDTNSDAIKDKLEKY LINQPCEVCQGKRLKPEALSVHLGQYNIDELTSVAIRDCLERVENLELSDRQKLIGELALKEIRARLQFLLDVGLDYLTL DRAAMTLSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNERLLQTLKKLRDLGNTLIVVEHDEDTIRTADHIIDI GPKAGVHGGEIVFQGSFDKFLKNKKSLTSAYLSGRRAIATPPERREGNGGRLRLENCTKNNLKNITVEIPLGKLVSVTGV SGSGKSTLMNELLYPALQHSLNRNVPFPKELGGVKGLKSIDKVIVIDQSPIGRTPRSNPATYTGIFDPIRNLFAETVEAK TRGYKKGRFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCEVCKGARYNRETLQVKFKGYSISDVLNMTVEEALEVFEN ITTAANRLQTLVDVGLGYIRLGQPAPTLSGGEAQRVKLASELSRRATGKTLYLIDEPTTGLSFYDVHHLLNVLQRLVDKG NSVLVIEHNLDVIRCSDWLIDLGPEGGDRGGEIIATGTPEDLIKVKESYTGKFLKPLLTKK
Sequences:
>Translated_941_residues MSKSDQIRIRGARQHNLKNVDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQLDKPDVDAIE GLSPAISIDQKSTSHNPRSTVGTVTEIADYLRLLFGRAGEPHCPHCDRPIAPQTIDEMCDRVLTLPDRTKFQLLAPIVRH QKGTHKKTLSSIAAEGFARVRINGETRELSDNITLNKNHYHTIEIVVDRLVKKEGIQERLVDSLSTCLKHSEGTAIVDLI ETGEQIIFSENFACPEHGAVMEELSPRLFSFNSPYGACPACHGLGSHRRFSPDLVIPDPKQPLYAAIAPWSEKENTYYLS LLYNLGQNFGFEIQTPWEKLKKEHQEILLHGTEEPIWFEEESRYGGGKGYYRHYSGILKLLERNYEDTNSDAIKDKLEKY LINQPCEVCQGKRLKPEALSVHLGQYNIDELTSVAIRDCLERVENLELSDRQKLIGELALKEIRARLQFLLDVGLDYLTL DRAAMTLSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNERLLQTLKKLRDLGNTLIVVEHDEDTIRTADHIIDI GPKAGVHGGEIVFQGSFDKFLKNKKSLTSAYLSGRRAIATPPERREGNGGRLRLENCTKNNLKNITVEIPLGKLVSVTGV SGSGKSTLMNELLYPALQHSLNRNVPFPKELGGVKGLKSIDKVIVIDQSPIGRTPRSNPATYTGIFDPIRNLFAETVEAK TRGYKKGRFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCEVCKGARYNRETLQVKFKGYSISDVLNMTVEEALEVFEN ITTAANRLQTLVDVGLGYIRLGQPAPTLSGGEAQRVKLASELSRRATGKTLYLIDEPTTGLSFYDVHHLLNVLQRLVDKG NSVLVIEHNLDVIRCSDWLIDLGPEGGDRGGEIIATGTPEDLIKVKESYTGKFLKPLLTKK >Mature_940_residues SKSDQIRIRGARQHNLKNVDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQLDKPDVDAIEG LSPAISIDQKSTSHNPRSTVGTVTEIADYLRLLFGRAGEPHCPHCDRPIAPQTIDEMCDRVLTLPDRTKFQLLAPIVRHQ KGTHKKTLSSIAAEGFARVRINGETRELSDNITLNKNHYHTIEIVVDRLVKKEGIQERLVDSLSTCLKHSEGTAIVDLIE TGEQIIFSENFACPEHGAVMEELSPRLFSFNSPYGACPACHGLGSHRRFSPDLVIPDPKQPLYAAIAPWSEKENTYYLSL LYNLGQNFGFEIQTPWEKLKKEHQEILLHGTEEPIWFEEESRYGGGKGYYRHYSGILKLLERNYEDTNSDAIKDKLEKYL INQPCEVCQGKRLKPEALSVHLGQYNIDELTSVAIRDCLERVENLELSDRQKLIGELALKEIRARLQFLLDVGLDYLTLD RAAMTLSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNERLLQTLKKLRDLGNTLIVVEHDEDTIRTADHIIDIG PKAGVHGGEIVFQGSFDKFLKNKKSLTSAYLSGRRAIATPPERREGNGGRLRLENCTKNNLKNITVEIPLGKLVSVTGVS GSGKSTLMNELLYPALQHSLNRNVPFPKELGGVKGLKSIDKVIVIDQSPIGRTPRSNPATYTGIFDPIRNLFAETVEAKT RGYKKGRFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCEVCKGARYNRETLQVKFKGYSISDVLNMTVEEALEVFENI TTAANRLQTLVDVGLGYIRLGQPAPTLSGGEAQRVKLASELSRRATGKTLYLIDEPTTGLSFYDVHHLLNVLQRLVDKGN SVLVIEHNLDVIRCSDWLIDLGPEGGDRGGEIIATGTPEDLIKVKESYTGKFLKPLLTKK
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=56.1702127659575, Blast_Score=1053, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104747; Mature: 104616
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSDQIRIRGARQHNLKNVDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESL CCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH SAYARQFLGQLDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIADYLRLLFGRAGE HHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC PHCPHCDRPIAPQTIDEMCDRVLTLPDRTKFQLLAPIVRHQKGTHKKTLSSIAAEGFARV CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEE RINGETRELSDNITLNKNHYHTIEIVVDRLVKKEGIQERLVDSLSTCLKHSEGTAIVDLI EECCCHHCCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEH ETGEQIIFSENFACPEHGAVMEELSPRLFSFNSPYGACPACHGLGSHRRFSPDLVIPDPK HCCCEEEEECCCCCCCCCHHHHHCCCHHEECCCCCCCCHHHHCCCCCCCCCCCEECCCCC QPLYAAIAPWSEKENTYYLSLLYNLGQNFGFEIQTPWEKLKKEHQEILLHGTEEPIWFEE CCCEEEECCCCCCCCCEEEEEHHHHCCCCCCEEECCHHHHHHHHHHHEEECCCCCEEECC ESRYGGGKGYYRHYSGILKLLERNYEDTNSDAIKDKLEKYLINQPCEVCQGKRLKPEALS CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHE VHLGQYNIDELTSVAIRDCLERVENLELSDRQKLIGELALKEIRARLQFLLDVGLDYLTL EEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC DRAAMTLSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNERLLQTLKKLRDLGNT CCHHEEECCCCCHHEEEHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCE LIVVEHDEDTIRTADHIIDIGPKAGVHGGEIVFQGSFDKFLKNKKSLTSAYLSGRRAIAT EEEEECCCCHHHHHHHHEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCC PPERREGNGGRLRLENCTKNNLKNITVEIPLGKLVSVTGVSGSGKSTLMNELLYPALQHS CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHH LNRNVPFPKELGGVKGLKSIDKVIVIDQSPIGRTPRSNPATYTGIFDPIRNLFAETVEAK HCCCCCCHHHHCCCCCHHCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH TRGYKKGRFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCEVCKGARYNRETLQVKFKG HCCCCCCCEEEEECCCEEECCCCCCCCEEEECCCCCEEEEEEECCCCCCCCEEEEEEECC YSISDVLNMTVEEALEVFENITTAANRLQTLVDVGLGYIRLGQPAPTLSGGEAQRVKLAS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHH ELSRRATGKTLYLIDEPTTGLSFYDVHHLLNVLQRLVDKGNSVLVIEHNLDVIRCSDWLI HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEE DLGPEGGDRGGEIIATGTPEDLIKVKESYTGKFLKPLLTKK EECCCCCCCCCEEEECCCHHHHHHHHHHHCHHHHHHHHCCC >Mature Secondary Structure SKSDQIRIRGARQHNLKNVDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESL CCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH SAYARQFLGQLDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIADYLRLLFGRAGE HHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC PHCPHCDRPIAPQTIDEMCDRVLTLPDRTKFQLLAPIVRHQKGTHKKTLSSIAAEGFARV CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEE RINGETRELSDNITLNKNHYHTIEIVVDRLVKKEGIQERLVDSLSTCLKHSEGTAIVDLI EECCCHHCCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEH ETGEQIIFSENFACPEHGAVMEELSPRLFSFNSPYGACPACHGLGSHRRFSPDLVIPDPK HCCCEEEEECCCCCCCCCHHHHHCCCHHEECCCCCCCCHHHHCCCCCCCCCCCEECCCCC QPLYAAIAPWSEKENTYYLSLLYNLGQNFGFEIQTPWEKLKKEHQEILLHGTEEPIWFEE CCCEEEECCCCCCCCCEEEEEHHHHCCCCCCEEECCHHHHHHHHHHHEEECCCCCEEECC ESRYGGGKGYYRHYSGILKLLERNYEDTNSDAIKDKLEKYLINQPCEVCQGKRLKPEALS CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHE VHLGQYNIDELTSVAIRDCLERVENLELSDRQKLIGELALKEIRARLQFLLDVGLDYLTL EEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC DRAAMTLSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNERLLQTLKKLRDLGNT CCHHEEECCCCCHHEEEHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCE LIVVEHDEDTIRTADHIIDIGPKAGVHGGEIVFQGSFDKFLKNKKSLTSAYLSGRRAIAT EEEEECCCCHHHHHHHHEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCC PPERREGNGGRLRLENCTKNNLKNITVEIPLGKLVSVTGVSGSGKSTLMNELLYPALQHS CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHH LNRNVPFPKELGGVKGLKSIDKVIVIDQSPIGRTPRSNPATYTGIFDPIRNLFAETVEAK HCCCCCCHHHHCCCCCHHCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH TRGYKKGRFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCEVCKGARYNRETLQVKFKG HCCCCCCCEEEEECCCEEECCCCCCCCEEEECCCCCEEEEEEECCCCCCCCEEEEEEECC YSISDVLNMTVEEALEVFENITTAANRLQTLVDVGLGYIRLGQPAPTLSGGEAQRVKLAS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHH ELSRRATGKTLYLIDEPTTGLSFYDVHHLLNVLQRLVDKGNSVLVIEHNLDVIRCSDWLI HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEE DLGPEGGDRGGEIIATGTPEDLIKVKESYTGKFLKPLLTKK EECCCCCCCCCEEEECCCHHHHHHHHHHHCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]