| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078076
Identifier: 170078076
GI number: 170078076
Start: 1542203
End: 1543939
Strand: Reverse
Name: 170078076
Synonym: SYNPCC7002_A1467
Alternate gene names: NA
Gene position: 1543939-1542203 (Counterclockwise)
Preceding gene: 170078077
Following gene: 170078075
Centisome position: 51.33
GC content: 35.0
Gene sequence:
>1737_bases ATGTCCAGTTGGCAGTCAGCTTATCAGTCTATAAACGAATTGGACGCATATAAAGATAATGCTTTAGGTTTATTTGCGCT AGCACTGAAATTTGGTCTTGAGGATCTTCCTAGTGTTGCTGCCGATTGTGTTACTGATGGTAGTGATGACAAAAAGCTTG ATATTGTTTATCTTAATCAAGAAGAGAAATATGCTGTTATTGCACAGTGTTATTTTTCGTCGAAAGATAAAGATAAAGCT CCTGCAAATAAGGCATCAGATTTAAATACTGGCATAGGCTGGCTACTACAGCGAGAAATCAATGATGTCCCTGAGCGAAT TAAATCATCCGCCATTAATTTAAGGGAAGCGATAAAACAAGATGAAGTTGAAAAAATATATGTTTGGTATGTTCATAATC TACCTGAATCAACAAATGTAGAGGAAGAACTAAAGACTGTGCAACAGACAGTTTCCAATACTCTAAACAGCAGTTTTTCC GAGAAAAAAATACAAGTTATTTATTGTGAAGTTGGAACAAATTGTTTACAAACTTGGTACGAAGAATGTCAAACTCCAAT ACTTGTAACAGAAGAAATTTCATTCGATTGTAAGTCTGGCTATGAAATTGAAGGAGAAGATTGGAAAGCTTATTGCACCG CAGTTTCTGCAGAAAAACTATACCAACTATATAGAAAATATCAAACAAAGATTTTCTCTGCTAACATTAGAGACTATCTA GGATCTAGAGCATCCGACTCCAACATTAACAACGGAATCAAGAATACAGTAGAGAATGATGCTGGAAATTTTTGGGTTTA TAATAATGGACTAACTATTATTACTCATTCTTATGATGTAAAGGAAGGTGAAAGTCGAAAAATCATTGTAAGTGGACTTT CAATAGTCAACGGGGCTCAAACCACTGGTGCGATCGGCTCTTTGAAAGTACCTCCAGGTAACAGTGCAATGGTTCAAGCT CGATTTATTGCTATTAATCAGGGAAATCCTGATTTAATTCAGCAAATCATTCAATTCAATAATAGTCAAAATAAAGTGGA AGCTGCGGACTTTAGGAGTACTGATAAAATTCAAAAGCGACTGAAGACAGAAATGCAAGAAATTCCTGATGCTGAATATG AAGGTGGACGCAGAGGAGGAGCTGGTGATGCTATTAGACGTAGACCAAATCTTCTTGCTTCTTATTCCGTAGGCCAGGCA TTAGCAGCTTTTCATGGCGATCCAATCACTGCATATAATAAAAAGTCAGGTATTTGGATTAACGATAGACTTTATTCAAA ATATTTTAATGAAAGAACGAAAGCATCTCATCTAGTTTGTACCTATTCATTAGTTAAAGCTATTGAGACTAAGAAGGAAG AATTAATTAAAAAGCAAGAACTGACAACAATTCAGTCGAATGTATTATCTTTCTTTAGAAAGCGCGGTTCAATATATTTG TTTACATATGCCATTTCCTCTTGTTTGGAAGTCTTTTTAGATCGAAAAATCCCTGACTTATTCAGTGTTTCTTTTGGAAA AAAGTGCTCTCCCATCCAAGCAAGAGAAAACTGGAATCTTGTTATTGATAAGTTACTACCCTTCTGTACTCAGTTAAATA CTGCATTAGACAATAGCTTAAAGAATATTGGAGAAATTGAGGCTGCCATTAATAATCTTCGATCTTTAGTAGCTGCAACC CGTGATTCTAATCAAGAAATATACAGTGAATTTGCTGATTGTATAGAAATCAAATAA
Upstream 100 bases:
>100_bases TCTTCTTTATATTTAAAGTTTTTTGTGTTTTTGATAAGATGAAATATGTTTTTTGAATCAGTCGGTCATTGTAAACTTTT TTAAAAAGGAAATTTTAAGT
Downstream 100 bases:
>100_bases TACTTGATAAGCTAGTGGTTTTGTTTTGCTCTATAAATTGGCCATTATTATTGAGTAAATTCATGACGTTTTGGAGCTAT TACTGCTGCGATGGCTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 578; Mature: 577
Protein sequence:
>578_residues MSSWQSAYQSINELDAYKDNALGLFALALKFGLEDLPSVAADCVTDGSDDKKLDIVYLNQEEKYAVIAQCYFSSKDKDKA PANKASDLNTGIGWLLQREINDVPERIKSSAINLREAIKQDEVEKIYVWYVHNLPESTNVEEELKTVQQTVSNTLNSSFS EKKIQVIYCEVGTNCLQTWYEECQTPILVTEEISFDCKSGYEIEGEDWKAYCTAVSAEKLYQLYRKYQTKIFSANIRDYL GSRASDSNINNGIKNTVENDAGNFWVYNNGLTIITHSYDVKEGESRKIIVSGLSIVNGAQTTGAIGSLKVPPGNSAMVQA RFIAINQGNPDLIQQIIQFNNSQNKVEAADFRSTDKIQKRLKTEMQEIPDAEYEGGRRGGAGDAIRRRPNLLASYSVGQA LAAFHGDPITAYNKKSGIWINDRLYSKYFNERTKASHLVCTYSLVKAIETKKEELIKKQELTTIQSNVLSFFRKRGSIYL FTYAISSCLEVFLDRKIPDLFSVSFGKKCSPIQARENWNLVIDKLLPFCTQLNTALDNSLKNIGEIEAAINNLRSLVAAT RDSNQEIYSEFADCIEIK
Sequences:
>Translated_578_residues MSSWQSAYQSINELDAYKDNALGLFALALKFGLEDLPSVAADCVTDGSDDKKLDIVYLNQEEKYAVIAQCYFSSKDKDKA PANKASDLNTGIGWLLQREINDVPERIKSSAINLREAIKQDEVEKIYVWYVHNLPESTNVEEELKTVQQTVSNTLNSSFS EKKIQVIYCEVGTNCLQTWYEECQTPILVTEEISFDCKSGYEIEGEDWKAYCTAVSAEKLYQLYRKYQTKIFSANIRDYL GSRASDSNINNGIKNTVENDAGNFWVYNNGLTIITHSYDVKEGESRKIIVSGLSIVNGAQTTGAIGSLKVPPGNSAMVQA RFIAINQGNPDLIQQIIQFNNSQNKVEAADFRSTDKIQKRLKTEMQEIPDAEYEGGRRGGAGDAIRRRPNLLASYSVGQA LAAFHGDPITAYNKKSGIWINDRLYSKYFNERTKASHLVCTYSLVKAIETKKEELIKKQELTTIQSNVLSFFRKRGSIYL FTYAISSCLEVFLDRKIPDLFSVSFGKKCSPIQARENWNLVIDKLLPFCTQLNTALDNSLKNIGEIEAAINNLRSLVAAT RDSNQEIYSEFADCIEIK >Mature_577_residues SSWQSAYQSINELDAYKDNALGLFALALKFGLEDLPSVAADCVTDGSDDKKLDIVYLNQEEKYAVIAQCYFSSKDKDKAP ANKASDLNTGIGWLLQREINDVPERIKSSAINLREAIKQDEVEKIYVWYVHNLPESTNVEEELKTVQQTVSNTLNSSFSE KKIQVIYCEVGTNCLQTWYEECQTPILVTEEISFDCKSGYEIEGEDWKAYCTAVSAEKLYQLYRKYQTKIFSANIRDYLG SRASDSNINNGIKNTVENDAGNFWVYNNGLTIITHSYDVKEGESRKIIVSGLSIVNGAQTTGAIGSLKVPPGNSAMVQAR FIAINQGNPDLIQQIIQFNNSQNKVEAADFRSTDKIQKRLKTEMQEIPDAEYEGGRRGGAGDAIRRRPNLLASYSVGQAL AAFHGDPITAYNKKSGIWINDRLYSKYFNERTKASHLVCTYSLVKAIETKKEELIKKQELTTIQSNVLSFFRKRGSIYLF TYAISSCLEVFLDRKIPDLFSVSFGKKCSPIQARENWNLVIDKLLPFCTQLNTALDNSLKNIGEIEAAINNLRSLVAATR DSNQEIYSEFADCIEIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65012; Mature: 64881
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSWQSAYQSINELDAYKDNALGLFALALKFGLEDLPSVAADCVTDGSDDKKLDIVYLNQ CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCEEEEEEECC EEKYAVIAQCYFSSKDKDKAPANKASDLNTGIGWLLQREINDVPERIKSSAINLREAIKQ CCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DEVEKIYVWYVHNLPESTNVEEELKTVQQTVSNTLNSSFSEKKIQVIYCEVGTNCLQTWY CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHH EECQTPILVTEEISFDCKSGYEIEGEDWKAYCTAVSAEKLYQLYRKYQTKIFSANIRDYL HHHCCCEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC GSRASDSNINNGIKNTVENDAGNFWVYNNGLTIITHSYDVKEGESRKIIVSGLSIVNGAQ CCCCCCCCCCCHHHHHHCCCCCCEEEEECCEEEEEECCCCCCCCCCEEEEECCHHHCCCC TTGAIGSLKVPPGNSAMVQARFIAINQGNPDLIQQIIQFNNSQNKVEAADFRSTDKIQKR CCCCCCEEECCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCEEHHHCCCHHHHHHH LKTEMQEIPDAEYEGGRRGGAGDAIRRRPNLLASYSVGQALAAFHGDPITAYNKKSGIWI HHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCEEE NDRLYSKYFNERTKASHLVCTYSLVKAIETKKEELIKKQELTTIQSNVLSFFRKRGSIYL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE FTYAISSCLEVFLDRKIPDLFSVSFGKKCSPIQARENWNLVIDKLLPFCTQLNTALDNSL EHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KNIGEIEAAINNLRSLVAATRDSNQEIYSEFADCIEIK HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SSWQSAYQSINELDAYKDNALGLFALALKFGLEDLPSVAADCVTDGSDDKKLDIVYLNQ CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCEEEEEEECC EEKYAVIAQCYFSSKDKDKAPANKASDLNTGIGWLLQREINDVPERIKSSAINLREAIKQ CCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DEVEKIYVWYVHNLPESTNVEEELKTVQQTVSNTLNSSFSEKKIQVIYCEVGTNCLQTWY CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHH EECQTPILVTEEISFDCKSGYEIEGEDWKAYCTAVSAEKLYQLYRKYQTKIFSANIRDYL HHHCCCEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC GSRASDSNINNGIKNTVENDAGNFWVYNNGLTIITHSYDVKEGESRKIIVSGLSIVNGAQ CCCCCCCCCCCHHHHHHCCCCCCEEEEECCEEEEEECCCCCCCCCCEEEEECCHHHCCCC TTGAIGSLKVPPGNSAMVQARFIAINQGNPDLIQQIIQFNNSQNKVEAADFRSTDKIQKR CCCCCCEEECCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCEEHHHCCCHHHHHHH LKTEMQEIPDAEYEGGRRGGAGDAIRRRPNLLASYSVGQALAAFHGDPITAYNKKSGIWI HHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCEEE NDRLYSKYFNERTKASHLVCTYSLVKAIETKKEELIKKQELTTIQSNVLSFFRKRGSIYL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE FTYAISSCLEVFLDRKIPDLFSVSFGKKCSPIQARENWNLVIDKLLPFCTQLNTALDNSL EHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KNIGEIEAAINNLRSLVAATRDSNQEIYSEFADCIEIK HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA