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The map label for this gene is yciR [C]

Identifier: 170077969

GI number: 170077969

Start: 1413546

End: 1415888

Strand: Direct

Name: yciR [C]

Synonym: SYNPCC7002_A1355

Alternate gene names: 170077969

Gene position: 1413546-1415888 (Clockwise)

Preceding gene: 170077966

Following gene: 170077972

Centisome position: 46.99

GC content: 50.41

Gene sequence:

>2343_bases
ATGGTTAATGAATCGTCAGATCAAGGGGGGCAACCACCGAGAGGAATCGGCAGTTTTGCGTGGTTAATTGAGGCCTATGG
TCAGGCGATCGCCCTGTTAGAAAATCAAGCGGCCCAGATCGAAACTTTAGAACGTGAAAAAGATCATCTCGCCAACCAAT
ATCGAGAGGCGCTCCAGCAATACCATCAGCTCAAGGAGCAATACGATCACCAATACAGTCAACAGTACCAAGAATATTTT
TCGTTGCCCCTTCCCTGCTACCGTTGGCAAGCCATTGAGGGAGAGCTTTATTTATCGGACTTTAATCCGGCGGCGGCACG
GTTTAACAGCCAAGCACTCCAGCAGCCTTCTTTAAATCTTGGTCAACGACCCCAGAAAATTTTTGCTGCGTTACCCACCC
TCTACCACCACTTAGAAAATTGCCTCAAACGGGAGGTCTCGAACAGTCAGCGATTGCAATTTATTCGCTTAAATTTGTAC
CTCCGGGTGGAGTATGTGTTTATTGCTCCGGATCAAATCTTGATGTGTATTCTCGACGAGAGCGAGCAACTCCTCACGGA
ACAACAACTCCGCCAACAGGTGCGCCAACAGTCGGCGATCGCCAAATTAGGGAGCATCAGCCTCAACACATCAGATCTAG
CGAAATTATTTCGTCAAGCGGTGATTTTTGTGGCCCGCACCCTGGACGTTCCCTATAGCTGCCTCTATCTGAAACAAAAA
AAGACCTCTATTTGCACCCTAGAAGCAGGTTATGGTTGGCCTGTCGATCTCATCGGTGCGGTCACAGTGAGCACGACTCC
AGATAGCCACGTTGGCTACACCCTGACCCAACAACAGGCGATCAGCATCGAGGATTTGCGCGTTGAAAGTCGCTTTCGGG
GCGAAACGCTACTGCACAATTATCAAGTAGTCAGTGGAATTAGTATGCCCATTGGCCCAGTGGATAACCCCTGGGGAGTA
CTGGCGGTTTATAGTACCGAAGAACGTCATTTCAGTGGGGATGAGACTTATTTTCTCCAGGCGATCGCCCATGTTCTGTC
TAGTAGTATCGAACGCGATCGCCAGGCAGCGGACATGAACCTTTTACACCGCTCGATCAATGTGATCCGCCAGGGAGTGG
TAATCACCGATGCCCGGGAAGAGAATAATCCAATTATTTATGTCAACCAAGGTTTTGAAAAAATTACTGGCTACACCGCA
GATGAAATCCTTGGTCGTAACTGCAATTTTCTTCAGGGCCGCGATCGCCGACAGCCTCCCCTCACAGAATTGCGGGCTGC
GATCCTCAAGGGCCAAGAATGTAACGTCACCCTCCGCAACTACCGCAAAAATGGTGAACCCTTTTGGAATGCCCTCCACA
TTTTTCCGGTACGAGATCCTGCCGGTTATCTGACCCACTTTATTGGGATCCAAACGGATATTAGCCACGAAAAGGCCGCC
GCTGCTAACCTCCAAAAAACCGAAGCGCAATTTCACCAAACCTTCCAACTCGCCCCCATTGGCATGGCAATCACGACCTT
AGGGGGCCACTATGAACGGGTCAACCAAGCCTGGTGTCGGATCACTGGCTACGATCAAGAGACCCTCTTAGAAAAAACCT
ATCTAGAGTTAACCCATCCCGATGATCAAGCCGAAGATGAACGCCTCAATGAGCTCCTGCAGCAAGGCGATCGCCAGGAA
TTTCAGCGGGAAAAACGCTACATCGCCCAAGATGGCCAAAAAATTCACATCCTAGAACAAGTCGCCCTCGTGCGCGATGC
CGAAGGCAAACCCCTCCATGTAATTCGGCAAATGGTAGACATTGGCGATCGCAAACAAATAGAACAGCGCCTCGTCCAAG
AGGCCTTCTACGATCACCTCACCGGCCTCCCCAATCGCTCCCTCCTAGAAGAGCGCCTCGAGCAAGTCATTAAACAACAA
CAACGCTATCCCCAGCACCACAACGCCCTCTTATTTCTTGACTTAGATTATTTCAAAGCGATTAATGACCGCCTCGGCCA
CCTCGTTGGCGACCAGCTCCTACAAGACTTTGCCAAACGCATTTGTCACTGTCTCCGGGATGTGGATACCCTGGCCCGTT
TGGGGGGAGACGAATTTGTCGTACTCCTCACAGAAATAACCGAGCCCCAGACCGCCTTTGAGGTTAGTCAACGGATCCAT
AAAGCCCTACAAACCCCCTTTGAACTCGCAGGCCAGTCCCTATTTGTAAAGGTGAGCATTGGTGTCTTACCTAAACTTGA
TCGCTATCTGACGGCGACGGGCATTTTACGCGACGCAGACCTAGCGATGTACCATGCCAAAGCCAAGGGACGCGCGCGTT
CAGAAGTCTTTGAATTACCTTAA

Upstream 100 bases:

>100_bases
CTTCATTTTTAGCTCTTCTCGCACGTGCCCCCCATAAACAACATCAGAGCAGATTGTGTAACAAAAACAGAAGGAACGTT
GGATTAGGAATAGAGACTTT

Downstream 100 bases:

>100_bases
ATTTAGCCCACTTCAGCTAGCCTGAGAGATCACAACTAAAAAAATCTCCCCCCAACTGGGGGCAGGGGGGCTGTGTCAAT
AAGCTCTGAGGCGCAGTTTA

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 780; Mature: 780

Protein sequence:

>780_residues
MVNESSDQGGQPPRGIGSFAWLIEAYGQAIALLENQAAQIETLEREKDHLANQYREALQQYHQLKEQYDHQYSQQYQEYF
SLPLPCYRWQAIEGELYLSDFNPAAARFNSQALQQPSLNLGQRPQKIFAALPTLYHHLENCLKREVSNSQRLQFIRLNLY
LRVEYVFIAPDQILMCILDESEQLLTEQQLRQQVRQQSAIAKLGSISLNTSDLAKLFRQAVIFVARTLDVPYSCLYLKQK
KTSICTLEAGYGWPVDLIGAVTVSTTPDSHVGYTLTQQQAISIEDLRVESRFRGETLLHNYQVVSGISMPIGPVDNPWGV
LAVYSTEERHFSGDETYFLQAIAHVLSSSIERDRQAADMNLLHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTA
DEILGRNCNFLQGRDRRQPPLTELRAAILKGQECNVTLRNYRKNGEPFWNALHIFPVRDPAGYLTHFIGIQTDISHEKAA
AANLQKTEAQFHQTFQLAPIGMAITTLGGHYERVNQAWCRITGYDQETLLEKTYLELTHPDDQAEDERLNELLQQGDRQE
FQREKRYIAQDGQKIHILEQVALVRDAEGKPLHVIRQMVDIGDRKQIEQRLVQEAFYDHLTGLPNRSLLEERLEQVIKQQ
QRYPQHHNALLFLDLDYFKAINDRLGHLVGDQLLQDFAKRICHCLRDVDTLARLGGDEFVVLLTEITEPQTAFEVSQRIH
KALQTPFELAGQSLFVKVSIGVLPKLDRYLTATGILRDADLAMYHAKAKGRARSEVFELP

Sequences:

>Translated_780_residues
MVNESSDQGGQPPRGIGSFAWLIEAYGQAIALLENQAAQIETLEREKDHLANQYREALQQYHQLKEQYDHQYSQQYQEYF
SLPLPCYRWQAIEGELYLSDFNPAAARFNSQALQQPSLNLGQRPQKIFAALPTLYHHLENCLKREVSNSQRLQFIRLNLY
LRVEYVFIAPDQILMCILDESEQLLTEQQLRQQVRQQSAIAKLGSISLNTSDLAKLFRQAVIFVARTLDVPYSCLYLKQK
KTSICTLEAGYGWPVDLIGAVTVSTTPDSHVGYTLTQQQAISIEDLRVESRFRGETLLHNYQVVSGISMPIGPVDNPWGV
LAVYSTEERHFSGDETYFLQAIAHVLSSSIERDRQAADMNLLHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTA
DEILGRNCNFLQGRDRRQPPLTELRAAILKGQECNVTLRNYRKNGEPFWNALHIFPVRDPAGYLTHFIGIQTDISHEKAA
AANLQKTEAQFHQTFQLAPIGMAITTLGGHYERVNQAWCRITGYDQETLLEKTYLELTHPDDQAEDERLNELLQQGDRQE
FQREKRYIAQDGQKIHILEQVALVRDAEGKPLHVIRQMVDIGDRKQIEQRLVQEAFYDHLTGLPNRSLLEERLEQVIKQQ
QRYPQHHNALLFLDLDYFKAINDRLGHLVGDQLLQDFAKRICHCLRDVDTLARLGGDEFVVLLTEITEPQTAFEVSQRIH
KALQTPFELAGQSLFVKVSIGVLPKLDRYLTATGILRDADLAMYHAKAKGRARSEVFELP
>Mature_780_residues
MVNESSDQGGQPPRGIGSFAWLIEAYGQAIALLENQAAQIETLEREKDHLANQYREALQQYHQLKEQYDHQYSQQYQEYF
SLPLPCYRWQAIEGELYLSDFNPAAARFNSQALQQPSLNLGQRPQKIFAALPTLYHHLENCLKREVSNSQRLQFIRLNLY
LRVEYVFIAPDQILMCILDESEQLLTEQQLRQQVRQQSAIAKLGSISLNTSDLAKLFRQAVIFVARTLDVPYSCLYLKQK
KTSICTLEAGYGWPVDLIGAVTVSTTPDSHVGYTLTQQQAISIEDLRVESRFRGETLLHNYQVVSGISMPIGPVDNPWGV
LAVYSTEERHFSGDETYFLQAIAHVLSSSIERDRQAADMNLLHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTA
DEILGRNCNFLQGRDRRQPPLTELRAAILKGQECNVTLRNYRKNGEPFWNALHIFPVRDPAGYLTHFIGIQTDISHEKAA
AANLQKTEAQFHQTFQLAPIGMAITTLGGHYERVNQAWCRITGYDQETLLEKTYLELTHPDDQAEDERLNELLQQGDRQE
FQREKRYIAQDGQKIHILEQVALVRDAEGKPLHVIRQMVDIGDRKQIEQRLVQEAFYDHLTGLPNRSLLEERLEQVIKQQ
QRYPQHHNALLFLDLDYFKAINDRLGHLVGDQLLQDFAKRICHCLRDVDTLARLGGDEFVVLLTEITEPQTAFEVSQRIH
KALQTPFELAGQSLFVKVSIGVLPKLDRYLTATGILRDADLAMYHAKAKGRARSEVFELP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=301, Percent_Identity=29.5681063122924, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788381, Length=326, Percent_Identity=27.6073619631902, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=35.5932203389831, Blast_Score=94, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=33.7278106508876, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI87082007, Length=189, Percent_Identity=35.4497354497354, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=32.9113924050633, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=313, Percent_Identity=26.517571884984, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=34.1463414634146, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=182, Percent_Identity=31.8681318681319, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=32.0754716981132, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=118, Percent_Identity=39.8305084745763, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=30.625, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17136946, Length=115, Percent_Identity=28.695652173913, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 89322; Mature: 89322

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNESSDQGGQPPRGIGSFAWLIEAYGQAIALLENQAAQIETLEREKDHLANQYREALQQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
YHQLKEQYDHQYSQQYQEYFSLPLPCYRWQAIEGELYLSDFNPAAARFNSQALQQPSLNL
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCHHHHHHCHHHHCCCCCCC
GQRPQKIFAALPTLYHHLENCLKREVSNSQRLQFIRLNLYLRVEYVFIAPDQILMCILDE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEECC
SEQLLTEQQLRQQVRQQSAIAKLGSISLNTSDLAKLFRQAVIFVARTLDVPYSCLYLKQK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
KTSICTLEAGYGWPVDLIGAVTVSTTPDSHVGYTLTQQQAISIEDLRVESRFRGETLLHN
CCCEEEEECCCCCCHHHHEEEEEECCCCCCCCEEEEHHHHCCHHHHHHHHHHCCHHHHHH
YQVVSGISMPIGPVDNPWGVLAVYSTEERHFSGDETYFLQAIAHVLSSSIERDRQAADMN
HHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTADEILGRNCNFLQGRDRRQPP
HHHHHHHHHHCCEEEEECCCCCCCEEEEECCHHHHCCCCHHHHHCCCCCCCCCCCCCCCC
LTELRAAILKGQECNVTLRNYRKNGEPFWNALHIFPVRDPAGYLTHFIGIQTDISHEKAA
HHHHHHHHHCCCCCCEEHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHH
AANLQKTEAQFHQTFQLAPIGMAITTLGGHYERVNQAWCRITGYDQETLLEKTYLELTHP
HHHHHHHHHHHHHHHEECCHHHHHHHCCCHHHHHHHHHHEECCCCHHHHHHHHHHEEECC
DDQAEDERLNELLQQGDRQEFQREKRYIAQDGQKIHILEQVALVRDAEGKPLHVIRQMVD
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHC
IGDRKQIEQRLVQEAFYDHLTGLPNRSLLEERLEQVIKQQQRYPQHHNALLFLDLDYFKA
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
INDRLGHLVGDQLLQDFAKRICHCLRDVDTLARLGGDEFVVLLTEITEPQTAFEVSQRIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
KALQTPFELAGQSLFVKVSIGVLPKLDRYLTATGILRDADLAMYHAKAKGRARSEVFELP
HHHCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure
MVNESSDQGGQPPRGIGSFAWLIEAYGQAIALLENQAAQIETLEREKDHLANQYREALQQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
YHQLKEQYDHQYSQQYQEYFSLPLPCYRWQAIEGELYLSDFNPAAARFNSQALQQPSLNL
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCHHHHHHCHHHHCCCCCCC
GQRPQKIFAALPTLYHHLENCLKREVSNSQRLQFIRLNLYLRVEYVFIAPDQILMCILDE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEECC
SEQLLTEQQLRQQVRQQSAIAKLGSISLNTSDLAKLFRQAVIFVARTLDVPYSCLYLKQK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
KTSICTLEAGYGWPVDLIGAVTVSTTPDSHVGYTLTQQQAISIEDLRVESRFRGETLLHN
CCCEEEEECCCCCCHHHHEEEEEECCCCCCCCEEEEHHHHCCHHHHHHHHHHCCHHHHHH
YQVVSGISMPIGPVDNPWGVLAVYSTEERHFSGDETYFLQAIAHVLSSSIERDRQAADMN
HHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTADEILGRNCNFLQGRDRRQPP
HHHHHHHHHHCCEEEEECCCCCCCEEEEECCHHHHCCCCHHHHHCCCCCCCCCCCCCCCC
LTELRAAILKGQECNVTLRNYRKNGEPFWNALHIFPVRDPAGYLTHFIGIQTDISHEKAA
HHHHHHHHHCCCCCCEEHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHH
AANLQKTEAQFHQTFQLAPIGMAITTLGGHYERVNQAWCRITGYDQETLLEKTYLELTHP
HHHHHHHHHHHHHHHEECCHHHHHHHCCCHHHHHHHHHHEECCCCHHHHHHHHHHEEECC
DDQAEDERLNELLQQGDRQEFQREKRYIAQDGQKIHILEQVALVRDAEGKPLHVIRQMVD
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHC
IGDRKQIEQRLVQEAFYDHLTGLPNRSLLEERLEQVIKQQQRYPQHHNALLFLDLDYFKA
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
INDRLGHLVGDQLLQDFAKRICHCLRDVDTLARLGGDEFVVLLTEITEPQTAFEVSQRIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
KALQTPFELAGQSLFVKVSIGVLPKLDRYLTATGILRDADLAMYHAKAKGRARSEVFELP
HHHCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]