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The map label for this gene is dnaB [H]

Identifier: 170077886

GI number: 170077886

Start: 1316506

End: 1317795

Strand: Direct

Name: dnaB [H]

Synonym: SYNPCC7002_A1271

Alternate gene names: 170077886

Gene position: 1316506-1317795 (Clockwise)

Preceding gene: 170077884

Following gene: 170077887

Centisome position: 43.77

GC content: 51.32

Gene sequence:

>1290_bases
ATGGACCCAGAGGCCATGGGCCGGGTGGTGGATGTTCTGGTGATTAATGCCTTTTATGTCCAGGCCCACCGGGATATTTA
TCAAGGTTTGTTGGTGCTCCATAACCAAGGCAAACCGACGGATTTATTGGCCCTGAGTACCTGGCTCCAAGACAACGAAC
GTCTCGGAAAAGTCGGCGGTATTCCCAAGCTTTCCCAATTGGTGGATCGCACCGTCTCCGCTGTGAATATTGACCACTAT
GCGGAACTGGTCATGGATAAATACGTGCGGCGACAACTCATTGCCGGGGGCCATGAAATTATTGATCTGGGCTATGACAC
CGTTAAAACTCTACCCGATGTCCTCGATGAATCCGAGCAAAAAATCTTTCGGCTCACCCAGACCCGTCCCCAGGATGGCC
TAACCGCCATTGCCGAAACCATTGCCGAAGCCTTTAGCAACATCGAAGAACGCCAGACCAAACAGCAGGAAAAAGAGATG
CTGTCGGGGCTTTCGAGTGGGTTTTATGATCTCGATGCGATGACCAATGGCTTCCAACGCTCTGATCTGGTGATTATTGC
CGGACGTCCCGCCATGGGAAAAACCAGTTTTTCGCTCAATGTGGCCACTAATATCGCTAAAAAGGAACGGCTTCCCGTGG
CCATTTTTAGTTTAGAAATGTCGAAGGAGCAATTGGTGCAGCGCCTCTTGGCTGGGGAGGCTCAGATTGAAAGTAATCGT
CTCCGGGCCGGACGCCTCGATGAGGTTGATATGCGTCCCCTCCTCAAAGCGGTGGAATTTTTGTCGGATGTGCCTTTATT
TATCGATGATACGGCGAATATCACGGTAGGTCAGATGCGATCGCAGGCGCGGAAACTCCAGGCAGAGCAGGGGGGAAAGT
TAGGGCTAATCCTCATTGACTATCTACAACTCATGGAAGGCGGTGGTGACAATCGTGTCCAAGAACTCTCAAAAATTACG
CGATCGCTCAAAGGGCTCGCCAGGGAATTAGATGTACCCATTTTTGCCCTATCCCAGTTAAGTCGGGGGGTTGAGGCCCG
CAACAGCAAACGCCCGATGATGTCTGACCTGCGCGAATCAGGTTCCATCGAGCAGGATGCCGACCTGGTTTTAATGCTCT
ACCGCGACAGTTATTACAACCCAGATACCCCGGAGCGAGATATTGCCGAGGTGATTATTGCGAAACACCGTAATGGCCCC
ACCGGAACGGTTAAGCTGATTTTCCAGCCGGAGCTAACAAAGTTTTTAAATCTAGCCCAGAGTCCCAGCCCCTATGCAGA
AACCTATTAG

Upstream 100 bases:

>100_bases
TTCCTCCCCAACCATGGCCGATTCAACTCCCGCTTTTCCCGGTAACGCCCTTCCGCCCCAAAATATCGAAGCCGAAGAAT
TTATTCTGGGGGGGATTTTA

Downstream 100 bases:

>100_bases
AATCTGACAAAATCTGCGTGGCTATGATTTATTTTATTTATCAATAGCGGCCATATTTGCCTGAATTTTGGGGATCAGAG
CTTCTTTTTGAAGAGATTCT

Product: replicative DNA helicase

Products: NA

Alternate protein names: Asp dnaB intein [H]

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MDPEAMGRVVDVLVINAFYVQAHRDIYQGLLVLHNQGKPTDLLALSTWLQDNERLGKVGGIPKLSQLVDRTVSAVNIDHY
AELVMDKYVRRQLIAGGHEIIDLGYDTVKTLPDVLDESEQKIFRLTQTRPQDGLTAIAETIAEAFSNIEERQTKQQEKEM
LSGLSSGFYDLDAMTNGFQRSDLVIIAGRPAMGKTSFSLNVATNIAKKERLPVAIFSLEMSKEQLVQRLLAGEAQIESNR
LRAGRLDEVDMRPLLKAVEFLSDVPLFIDDTANITVGQMRSQARKLQAEQGGKLGLILIDYLQLMEGGGDNRVQELSKIT
RSLKGLARELDVPIFALSQLSRGVEARNSKRPMMSDLRESGSIEQDADLVLMLYRDSYYNPDTPERDIAEVIIAKHRNGP
TGTVKLIFQPELTKFLNLAQSPSPYAETY

Sequences:

>Translated_429_residues
MDPEAMGRVVDVLVINAFYVQAHRDIYQGLLVLHNQGKPTDLLALSTWLQDNERLGKVGGIPKLSQLVDRTVSAVNIDHY
AELVMDKYVRRQLIAGGHEIIDLGYDTVKTLPDVLDESEQKIFRLTQTRPQDGLTAIAETIAEAFSNIEERQTKQQEKEM
LSGLSSGFYDLDAMTNGFQRSDLVIIAGRPAMGKTSFSLNVATNIAKKERLPVAIFSLEMSKEQLVQRLLAGEAQIESNR
LRAGRLDEVDMRPLLKAVEFLSDVPLFIDDTANITVGQMRSQARKLQAEQGGKLGLILIDYLQLMEGGGDNRVQELSKIT
RSLKGLARELDVPIFALSQLSRGVEARNSKRPMMSDLRESGSIEQDADLVLMLYRDSYYNPDTPERDIAEVIIAKHRNGP
TGTVKLIFQPELTKFLNLAQSPSPYAETY
>Mature_429_residues
MDPEAMGRVVDVLVINAFYVQAHRDIYQGLLVLHNQGKPTDLLALSTWLQDNERLGKVGGIPKLSQLVDRTVSAVNIDHY
AELVMDKYVRRQLIAGGHEIIDLGYDTVKTLPDVLDESEQKIFRLTQTRPQDGLTAIAETIAEAFSNIEERQTKQQEKEM
LSGLSSGFYDLDAMTNGFQRSDLVIIAGRPAMGKTSFSLNVATNIAKKERLPVAIFSLEMSKEQLVQRLLAGEAQIESNR
LRAGRLDEVDMRPLLKAVEFLSDVPLFIDDTANITVGQMRSQARKLQAEQGGKLGLILIDYLQLMEGGGDNRVQELSKIT
RSLKGLARELDVPIFALSQLSRGVEARNSKRPMMSDLRESGSIEQDADLVLMLYRDSYYNPDTPERDIAEVIIAKHRNGP
TGTVKLIFQPELTKFLNLAQSPSPYAETY

Specific function: The intein is an endonuclease (Potential) [H]

COG id: COG0305

COG function: function code L; Replicative DNA helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SF4 helicase domain [H]

Homologues:

Organism=Escherichia coli, GI1790486, Length=425, Percent_Identity=41.6470588235294, Blast_Score=323, Evalue=1e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007692
- InterPro:   IPR007694
- InterPro:   IPR007693
- InterPro:   IPR016136
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141 [H]

Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 47907; Mature: 47907

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPEAMGRVVDVLVINAFYVQAHRDIYQGLLVLHNQGKPTDLLALSTWLQDNERLGKVGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCHHHHHCCC
IPKLSQLVDRTVSAVNIDHYAELVMDKYVRRQLIAGGHEIIDLGYDTVKTLPDVLDESEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCHHHH
KIFRLTQTRPQDGLTAIAETIAEAFSNIEERQTKQQEKEMLSGLSSGFYDLDAMTNGFQR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHCCCCC
SDLVIIAGRPAMGKTSFSLNVATNIAKKERLPVAIFSLEMSKEQLVQRLLAGEAQIESNR
CCEEEEECCCCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHCCCC
LRAGRLDEVDMRPLLKAVEFLSDVPLFIDDTANITVGQMRSQARKLQAEQGGKLGLILID
CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEHHHHHHHHHHHHHHCCCCEEHHHHH
YLQLMEGGGDNRVQELSKITRSLKGLARELDVPIFALSQLSRGVEARNSKRPMMSDLRES
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHCCCCCCHHHHHHHC
GSIEQDADLVLMLYRDSYYNPDTPERDIAEVIIAKHRNGPTGTVKLIFQPELTKFLNLAQ
CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC
SPSPYAETY
CCCCCCCCC
>Mature Secondary Structure
MDPEAMGRVVDVLVINAFYVQAHRDIYQGLLVLHNQGKPTDLLALSTWLQDNERLGKVGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCHHHHHCCC
IPKLSQLVDRTVSAVNIDHYAELVMDKYVRRQLIAGGHEIIDLGYDTVKTLPDVLDESEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCHHHH
KIFRLTQTRPQDGLTAIAETIAEAFSNIEERQTKQQEKEMLSGLSSGFYDLDAMTNGFQR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHCCCCC
SDLVIIAGRPAMGKTSFSLNVATNIAKKERLPVAIFSLEMSKEQLVQRLLAGEAQIESNR
CCEEEEECCCCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHCCCC
LRAGRLDEVDMRPLLKAVEFLSDVPLFIDDTANITVGQMRSQARKLQAEQGGKLGLILID
CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEHHHHHHHHHHHHHHCCCCEEHHHHH
YLQLMEGGGDNRVQELSKITRSLKGLARELDVPIFALSQLSRGVEARNSKRPMMSDLRES
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHCCCCCCHHHHHHHC
GSIEQDADLVLMLYRDSYYNPDTPERDIAEVIIAKHRNGPTGTVKLIFQPELTKFLNLAQ
CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC
SPSPYAETY
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]