Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170077842

Identifier: 170077842

GI number: 170077842

Start: 1270155

End: 1270586

Strand: Reverse

Name: 170077842

Synonym: SYNPCC7002_A1226

Alternate gene names: NA

Gene position: 1270586-1270155 (Counterclockwise)

Preceding gene: 170077845

Following gene: 170077841

Centisome position: 42.24

GC content: 50.0

Gene sequence:

>432_bases
ATGGCATATTGGCTTTTTCAAGGGAACCCCCGCTATCATCGTGTACTTGATGCCATCCGTGAACAAACGGAAATGCCCTG
GCTTGTGACCCGCTACAAAAACAAAATTCAAGTCGGTGATGGCGTTTTAATTTGGATGGCCGGTGAAGCTGCCGGCATTT
ATGCGATCGCCGAAATCATTAGTCTCCCCACAGTTATTTCCCCCAAAGACATTCAAGACCTCGACTATTGGACGGATCCC
AAGCGACTCCGAGCCGATAAACCCCGCAGTCAGATCCGCTTTATTCGCAAGCTCCTCGGTCAACCCCTACGCAAGATAGA
ATTGCGATTTGATGGCATCCTGCGCGATCTTGATGTTATCCACACGCCCAGCAGTACCAATTTCAAAATCACCCCCGAAC
AATGGCTGCGGGTGCATCAACTGAAAGGGTGA

Upstream 100 bases:

>100_bases
TGCTGATAGCGCTATACCATTCTGCTAAGAATTTACCGCATTGGGGAAATGGCGGTATTGTATTCCTCAGCATCCTTTAC
ATTTTCTCAATCTGGATCAG

Downstream 100 bases:

>100_bases
TCTCCCCTAACTTCCCCAAAAACCTCCGTTAAAATAAAACTCTGCTGTGCACCTTTCTTCACCATGACCTCGACCCAAAG
TAAAATGCCCCCAACCGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEIISLPTVISPKDIQDLDYWTDP
KRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVIHTPSSTNFKITPEQWLRVHQLKG

Sequences:

>Translated_143_residues
MAYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEIISLPTVISPKDIQDLDYWTDP
KRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVIHTPSSTNFKITPEQWLRVHQLKG
>Mature_142_residues
AYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEIISLPTVISPKDIQDLDYWTDPK
RLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVIHTPSSTNFKITPEQWLRVHQLKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16767; Mature: 16636

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEII
CEEEEECCCCHHHHHHHHHHHHCCCCCCEEHHCCEEEECCCEEEEEECCCCHHHHHHHHH
SLPTVISPKDIQDLDYWTDPKRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVI
HCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
HTPSSTNFKITPEQWLRVHQLKG
ECCCCCCEEECHHHHHHHHHCCC
>Mature Secondary Structure 
AYWLFQGNPRYHRVLDAIREQTEMPWLVTRYKNKIQVGDGVLIWMAGEAAGIYAIAEII
EEEEECCCCHHHHHHHHHHHHCCCCCCEEHHCCEEEECCCEEEEEECCCCHHHHHHHHH
SLPTVISPKDIQDLDYWTDPKRLRADKPRSQIRFIRKLLGQPLRKIELRFDGILRDLDVI
HCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
HTPSSTNFKITPEQWLRVHQLKG
ECCCCCCEEECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA