| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077839
Identifier: 170077839
GI number: 170077839
Start: 1267940
End: 1268440
Strand: Reverse
Name: 170077839
Synonym: SYNPCC7002_A1223
Alternate gene names: NA
Gene position: 1268440-1267940 (Counterclockwise)
Preceding gene: 170077841
Following gene: 170077838
Centisome position: 42.17
GC content: 53.09
Gene sequence:
>501_bases ATGACTTTGACAGCGGCAGCCGTAATTGAATATTTGGGCCTAGAACCCCATCTGGAAGGGGGCTATTTTCGGGAAACTTA CCGCTCAACACTCTCTATGGCCACCGAAAGACCGGGAGGCGATCGCCAATTGTTAACCTCGATTTACTATCTGCTCAGTC AATCGCGGCCCATGGACTATCTGCACCGCAACCAATCGCCGATCATGCATTATTTCCACGGCGGTGCGGCGATCACCTAC CATACCCTTTCTCCGGAAGGCCAGTGGCAGACCACGAAGCTCGGCTTTGACTTAGCGGCGGGAGAAGTGCCCCAACTCCT GGTACCAGGGGGTTACTGGAAAACGGCCATTTTAGAAGCGGGCGAATTTGGTCTTTTGGGGGAAGCGGTGGCCCCAGGAT TTGATTACCAAGATTTGGAAGTTGCCCAGGGGTCAGTGCTCCAAGAACTGTATCCGGAGCATTGGCCGCAACTCAAGGAT TATATTCATCCGAGCCATTAA
Upstream 100 bases:
>100_bases ATTTTTAGCTTGTTTGATCTCTGTGATCGGGCGCTATCTTGAAGTCAAACAAAATTCGAGCTAATTTTCACGTTCGTTTT CACTAGGGGATTTTTAATTT
Downstream 100 bases:
>100_bases CTAAAGGAAATCATTGCCTCGTTTTGGCGATCGCCCAGGGAAACCCGTTACACTTTGGCTAACGGATCGGCAACCGAGGG AAACACAATGGCAATTTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MTLTAAAVIEYLGLEPHLEGGYFRETYRSTLSMATERPGGDRQLLTSIYYLLSQSRPMDYLHRNQSPIMHYFHGGAAITY HTLSPEGQWQTTKLGFDLAAGEVPQLLVPGGYWKTAILEAGEFGLLGEAVAPGFDYQDLEVAQGSVLQELYPEHWPQLKD YIHPSH
Sequences:
>Translated_166_residues MTLTAAAVIEYLGLEPHLEGGYFRETYRSTLSMATERPGGDRQLLTSIYYLLSQSRPMDYLHRNQSPIMHYFHGGAAITY HTLSPEGQWQTTKLGFDLAAGEVPQLLVPGGYWKTAILEAGEFGLLGEAVAPGFDYQDLEVAQGSVLQELYPEHWPQLKD YIHPSH >Mature_165_residues TLTAAAVIEYLGLEPHLEGGYFRETYRSTLSMATERPGGDRQLLTSIYYLLSQSRPMDYLHRNQSPIMHYFHGGAAITYH TLSPEGQWQTTKLGFDLAAGEVPQLLVPGGYWKTAILEAGEFGLLGEAVAPGFDYQDLEVAQGSVLQELYPEHWPQLKDY IHPSH
Specific function: Unknown
COG id: COG3542
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6323561, Length=135, Percent_Identity=40, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18600; Mature: 18469
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTAAAVIEYLGLEPHLEGGYFRETYRSTLSMATERPGGDRQLLTSIYYLLSQSRPMDY CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH LHRNQSPIMHYFHGGAAITYHTLSPEGQWQTTKLGFDLAAGEVPQLLVPGGYWKTAILEA HHCCCCCEEEEEECCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEECCCCHHHHHHCC GEFGLLGEAVAPGFDYQDLEVAQGSVLQELYPEHWPQLKDYIHPSH CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCHHCCHHHHHCCCCCC >Mature Secondary Structure TLTAAAVIEYLGLEPHLEGGYFRETYRSTLSMATERPGGDRQLLTSIYYLLSQSRPMDY CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH LHRNQSPIMHYFHGGAAITYHTLSPEGQWQTTKLGFDLAAGEVPQLLVPGGYWKTAILEA HHCCCCCEEEEEECCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEECCCCHHHHHHCC GEFGLLGEAVAPGFDYQDLEVAQGSVLQELYPEHWPQLKDYIHPSH CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCHHCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA