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The map label for this gene is rbcR [H]

Identifier: 170077815

GI number: 170077815

Start: 1241715

End: 1242695

Strand: Direct

Name: rbcR [H]

Synonym: SYNPCC7002_A1198

Alternate gene names: 170077815

Gene position: 1241715-1242695 (Clockwise)

Preceding gene: 170077811

Following gene: 170077817

Centisome position: 41.28

GC content: 50.76

Gene sequence:

>981_bases
ATGTCTGACATTCCATTTACCCTGGATCAACTCCGTATCCTCAAAGCCATCTCCACCGAAGGAAGCTTTAAACGGGCAGC
AGATAGTCTCTACGTCTCCCAACCTGCCGTCAGCCTCCAGGTACAAAACCTCGAAAAACAGCTCAATGTCCCCCTCTTCG
ACCGGGGTGGACGGCGCGCCCAACTCACCGAAGCCGGCTATCTTCTCCTCGATTACGGCGAAAAAATTATTACCCTCTGC
CAAGAAACCTGTCGGGCCATCGAAGATTTACAAAATCTCCAGGGGGGCACCCTGATTGTCGGCGCCTCCCAAACCACGGG
TACCTACCTCATTCCCCGGATGATTGGTTGCTTCCGGCAGAAATACCCCGATGTGGCAGTCCAGTTACAAGTACATTCGA
CGCGACGCACCTCCTGGGGAGTGGCTAACGGTCAAGTGGATCTCGCAATCATTGGCGGCGAAGTTCCTTCGGAGTTGCAA
GATACGTTGAAAATCGTGCCCTATGCCGAGGATGAACTGTCCCTGATTTTGCCCGTGAGTCATCCCCTCGCCAAGGCAGA
AACCATTTATCGAGATGATTTGTACAAACTGAAATTCATTGCCCTCGATTCTCAATCGACGATCCGCAAGGTCATTGATC
AGGTCTTAACCCGCTGCGATATCGATACCAAACGGCTCAAGATTGAAATGGAACTTAATTCCATCGAGGCAATTAAAAAT
GCTGTGCAGTCGGGTCTAGGGGCTTCCTTTGTCTCAGTGACGGCCATTGAGAAAGAACTACGGATGGGGGTGCTGCACCG
GGCGCGCATTGAAGATGTGGAAGTGCGGCGTATTTTAAGCGTGATCGTCAATCCAAACCGTTATCGCTCCAAGGCAGCGG
AAGCCTTTTGTCTCGAAATTTTGCCCCAATTTGCCAATCAGTTGAAAAAGTTTGATTTGAGTGAGCTGATGCCCCAGGGT
CTAGAATCCGGTCAAAAATAA

Upstream 100 bases:

>100_bases
TATATTATCCATGAAAAGAGATACGATCCCCTTATTATGGTACTGTCAATCATAAAACCAGCCGTGATCCCTCTTTGTCG
TCCCTTTTTGCCGAGGCTAT

Downstream 100 bases:

>100_bases
GGGTTTGATGGGGATTATTCTCGGCTCAGGTAATGGTAGGGATAACGCCGGGGGGAGCCGGGTTCGGTTTCAAGCTCGAA
GTTGACAATCTGCCAGCGGT

Product: LysR transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSDIPFTLDQLRILKAISTEGSFKRAADSLYVSQPAVSLQVQNLEKQLNVPLFDRGGRRAQLTEAGYLLLDYGEKIITLC
QETCRAIEDLQNLQGGTLIVGASQTTGTYLIPRMIGCFRQKYPDVAVQLQVHSTRRTSWGVANGQVDLAIIGGEVPSELQ
DTLKIVPYAEDELSLILPVSHPLAKAETIYRDDLYKLKFIALDSQSTIRKVIDQVLTRCDIDTKRLKIEMELNSIEAIKN
AVQSGLGASFVSVTAIEKELRMGVLHRARIEDVEVRRILSVIVNPNRYRSKAAEAFCLEILPQFANQLKKFDLSELMPQG
LESGQK

Sequences:

>Translated_326_residues
MSDIPFTLDQLRILKAISTEGSFKRAADSLYVSQPAVSLQVQNLEKQLNVPLFDRGGRRAQLTEAGYLLLDYGEKIITLC
QETCRAIEDLQNLQGGTLIVGASQTTGTYLIPRMIGCFRQKYPDVAVQLQVHSTRRTSWGVANGQVDLAIIGGEVPSELQ
DTLKIVPYAEDELSLILPVSHPLAKAETIYRDDLYKLKFIALDSQSTIRKVIDQVLTRCDIDTKRLKIEMELNSIEAIKN
AVQSGLGASFVSVTAIEKELRMGVLHRARIEDVEVRRILSVIVNPNRYRSKAAEAFCLEILPQFANQLKKFDLSELMPQG
LESGQK
>Mature_325_residues
SDIPFTLDQLRILKAISTEGSFKRAADSLYVSQPAVSLQVQNLEKQLNVPLFDRGGRRAQLTEAGYLLLDYGEKIITLCQ
ETCRAIEDLQNLQGGTLIVGASQTTGTYLIPRMIGCFRQKYPDVAVQLQVHSTRRTSWGVANGQVDLAIIGGEVPSELQD
TLKIVPYAEDELSLILPVSHPLAKAETIYRDDLYKLKFIALDSQSTIRKVIDQVLTRCDIDTKRLKIEMELNSIEAIKNA
VQSGLGASFVSVTAIEKELRMGVLHRARIEDVEVRRILSVIVNPNRYRSKAAEAFCLEILPQFANQLKKFDLSELMPQGL
ESGQK

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=32.7354260089686, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=31.7567567567568, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1790399, Length=281, Percent_Identity=28.1138790035587, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=26.643598615917, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787530, Length=259, Percent_Identity=25.0965250965251, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=29.1828793774319, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788626, Length=259, Percent_Identity=28.1853281853282, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=26.1044176706827, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=25.0847457627119, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=30.1694915254237, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=29.4416243654822, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789204, Length=308, Percent_Identity=25.6493506493506, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081904, Length=176, Percent_Identity=28.9772727272727, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082024, Length=279, Percent_Identity=26.5232974910394, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790208, Length=308, Percent_Identity=25.974025974026, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788297, Length=238, Percent_Identity=24.7899159663866, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786401, Length=264, Percent_Identity=27.6515151515151, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787949, Length=216, Percent_Identity=27.3148148148148, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36378; Mature: 36246

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIPFTLDQLRILKAISTEGSFKRAADSLYVSQPAVSLQVQNLEKQLNVPLFDRGGRRA
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHEECCCCHHHHHHHHHHHCCCCEECCCCCEE
QLTEAGYLLLDYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLIPRMIGCFRQ
EEHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
KYPDVAVQLQVHSTRRTSWGVANGQVDLAIIGGEVPSELQDTLKIVPYAEDELSLILPVS
CCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHEECCCCCCCCEEEEECC
HPLAKAETIYRDDLYKLKFIALDSQSTIRKVIDQVLTRCDIDTKRLKIEMELNSIEAIKN
CCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHH
AVQSGLGASFVSVTAIEKELRMGVLHRARIEDVEVRRILSVIVNPNRYRSKAAEAFCLEI
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPQFANQLKKFDLSELMPQGLESGQK
HHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDIPFTLDQLRILKAISTEGSFKRAADSLYVSQPAVSLQVQNLEKQLNVPLFDRGGRRA
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHEECCCCHHHHHHHHHHHCCCCEECCCCCEE
QLTEAGYLLLDYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLIPRMIGCFRQ
EEHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
KYPDVAVQLQVHSTRRTSWGVANGQVDLAIIGGEVPSELQDTLKIVPYAEDELSLILPVS
CCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHEECCCCCCCCEEEEECC
HPLAKAETIYRDDLYKLKFIALDSQSTIRKVIDQVLTRCDIDTKRLKIEMELNSIEAIKN
CCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHH
AVQSGLGASFVSVTAIEKELRMGVLHRARIEDVEVRRILSVIVNPNRYRSKAAEAFCLEI
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPQFANQLKKFDLSELMPQGLESGQK
HHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]