| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170077763
Identifier: 170077763
GI number: 170077763
Start: 1179067
End: 1179636
Strand: Direct
Name: 170077763
Synonym: SYNPCC7002_A1145
Alternate gene names: NA
Gene position: 1179067-1179636 (Clockwise)
Preceding gene: 170077761
Following gene: 170077764
Centisome position: 39.2
GC content: 52.28
Gene sequence:
>570_bases ATGGTTCGTGTCACAAATCCTTTGTTACAGCCGTTGCTACGTGCCATTGCGCCCCTAGCGGTGCTGACCCTCGCTGGCTG TTCTTTTTCCGTCGAGGGCTTATCCTTTGGTTTCGGGAACAGAACCCTCGATGCTGAAAAACTCGAAACAGAAATCTCCC AAGGACTTACCACCCAAACGGGATTGGCGACGACAGCAGTGACTTGCCCTGAAGATAAAGCCATCGAAGCGGGCAATGTG TTTAGCTGTGAGGCCGCTTTGGAAGGAGGTCAGACCCTCGCCATTCAAGTCACCCAAAGTGATGACGAGGGTAATGTTAA CTGGAGTGCCGATGAGGGCCTCGCAAATCTCCGGGGATTAATCTCCAGTGAGACTTTAGAAACACAAATCGCCCAGGGTA TCGCTGAACAACTGAACGTCGAAGCGACCATCGATTGCGGTGCTCCCTATCGGATCTTGCTCACCGGCGAAAGTTTTAAC TGCACAGCCACGGATAACTCTGGTAATTCGGCTTCTGTGGCAGTAACCGCTGAGGATGATGCGGGCAATGTGGTGTGGCG ACTGCAATAA
Upstream 100 bases:
>100_bases ACGTTTTTCGATCGGTTGAGACCGCCCCCAAAAAGGCAATGTATTTGAGGTTCCTGGAGATTCACCGCTCTTTATTGTCG ATTTCTTGAACTGATTGATT
Downstream 100 bases:
>100_bases ATTGGGCTTCGGGATTTCCAGAGTGCCCCAAAAGGCGATCGCCACCTTGTAAAATACCCACTTAACCATTGAGTTTTTTA GCAGCAAGCAACCTCAAAGC
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MVRVTNPLLQPLLRAIAPLAVLTLAGCSFSVEGLSFGFGNRTLDAEKLETEISQGLTTQTGLATTAVTCPEDKAIEAGNV FSCEAALEGGQTLAIQVTQSDDEGNVNWSADEGLANLRGLISSETLETQIAQGIAEQLNVEATIDCGAPYRILLTGESFN CTATDNSGNSASVAVTAEDDAGNVVWRLQ
Sequences:
>Translated_189_residues MVRVTNPLLQPLLRAIAPLAVLTLAGCSFSVEGLSFGFGNRTLDAEKLETEISQGLTTQTGLATTAVTCPEDKAIEAGNV FSCEAALEGGQTLAIQVTQSDDEGNVNWSADEGLANLRGLISSETLETQIAQGIAEQLNVEATIDCGAPYRILLTGESFN CTATDNSGNSASVAVTAEDDAGNVVWRLQ >Mature_189_residues MVRVTNPLLQPLLRAIAPLAVLTLAGCSFSVEGLSFGFGNRTLDAEKLETEISQGLTTQTGLATTAVTCPEDKAIEAGNV FSCEAALEGGQTLAIQVTQSDDEGNVNWSADEGLANLRGLISSETLETQIAQGIAEQLNVEATIDCGAPYRILLTGESFN CTATDNSGNSASVAVTAEDDAGNVVWRLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19708; Mature: 19708
Theoretical pI: Translated: 3.73; Mature: 3.73
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRVTNPLLQPLLRAIAPLAVLTLAGCSFSVEGLSFGFGNRTLDAEKLETEISQGLTTQT CCEECHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCHHHHHHHHHHCCCCCC GLATTAVTCPEDKAIEAGNVFSCEAALEGGQTLAIQVTQSDDEGNVNWSADEGLANLRGL CCEEEEEECCCCCCCCCCCEEEEHHHHCCCCEEEEEEEECCCCCCEEECCCCCHHHHHHH ISSETLETQIAQGIAEQLNVEATIDCGAPYRILLTGESFNCTATDNSGNSASVAVTAEDD HCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCC AGNVVWRLQ CCCEEEEEC >Mature Secondary Structure MVRVTNPLLQPLLRAIAPLAVLTLAGCSFSVEGLSFGFGNRTLDAEKLETEISQGLTTQT CCEECHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCHHHHHHHHHHCCCCCC GLATTAVTCPEDKAIEAGNVFSCEAALEGGQTLAIQVTQSDDEGNVNWSADEGLANLRGL CCEEEEEECCCCCCCCCCCEEEEHHHHCCCCEEEEEEEECCCCCCEEECCCCCHHHHHHH ISSETLETQIAQGIAEQLNVEATIDCGAPYRILLTGESFNCTATDNSGNSASVAVTAEDD HCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCC AGNVVWRLQ CCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA