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The map label for this gene is ndhN

Identifier: 170077761

GI number: 170077761

Start: 1177107

End: 1177580

Strand: Direct

Name: ndhN

Synonym: SYNPCC7002_A1143

Alternate gene names: 170077761

Gene position: 1177107-1177580 (Clockwise)

Preceding gene: 170077760

Following gene: 170077763

Centisome position: 39.13

GC content: 51.9

Gene sequence:

>474_bases
ATGGCACTTCTGACCACCGGCAAAAGCTTCATTCGCACCGTAGAAAAGTCTGGCGCAGTTGCAGTCTATGCTCCCCTTGA
GGGTGGTTTTGAAGGCCGCTATGTGCGTCGTTTACGTTGCTCTGGTTATTCAGTGGTCAATTTGACGGCGCGGGGTTTGG
GAGATGTGGCGGCCTATTTAACGCAATACCACGGGATTCGCCCCCCCCACCTGGGTAAAAAAGATATTGCTGGCAGTGGC
GCGGCGGTGGGTCTCCGGTATTATGTGCCGGGAATTGCGAGCTACCAATTGGAAAATCTCCCCCAAAAGAGCAAAGGGAT
TATTCTCTGGATCATTGAAGGGTTTGTGCTTTCTCGCCAGGAACAGGAATACCTTGTGAGCCTGACCCAAGACAATCCTC
AGATTAAAGTGGTCGTGGAAATGGGTGGCGATCGCCAATTTTCCTTTAAGCCCCTGGCTGACCTCTTGGTTTAG

Upstream 100 bases:

>100_bases
CGCGTTGCACCACGGCTCCGCTTAAAAGTTTAACGACAGGGGCCAGGGGAATCCGATATAATTTTTTGGCAAGTTCAATC
CATCTCAAGATCGTAAAACC

Downstream 100 bases:

>100_bases
TTAGAGAGCCGGGCGTAATTTTAAATAACCGTACAAAGAAGTTACGCCCACCACAATGCCGACAACAATTAAGCTGCCGT
TAAGCCCCCAAAGCCACGTT

Product: hypothetical protein

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase I subunit N; NDH-1 subunit N; NDH-N

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MALLTTGKSFIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRPPHLGKKDIAGSG
AAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQEQEYLVSLTQDNPQIKVVVEMGGDRQFSFKPLADLLV

Sequences:

>Translated_157_residues
MALLTTGKSFIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRPPHLGKKDIAGSG
AAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQEQEYLVSLTQDNPQIKVVVEMGGDRQFSFKPLADLLV
>Mature_156_residues
ALLTTGKSFIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRPPHLGKKDIAGSGA
AVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQEQEYLVSLTQDNPQIKVVVEMGGDRQFSFKPLADLLV

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I ndhN subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDHN_SYNP2 (B1XK97)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734399.1
- GeneID:   6057693
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1143
- HOGENOM:   HBG317155
- OMA:   RPPHLGH
- ProtClustDB:   CLSK893132
- GO:   GO:0006810
- HAMAP:   MF_01353
- InterPro:   IPR020874

Pfam domain/function: PF11909 NdhN

EC number: 1.6.5.3

Molecular weight: Translated: 17191; Mature: 17060

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLTTGKSFIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYL
CEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHH
TQYHGIRPPHLGKKDIAGSGAAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQ
HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCEEEEEECCCHHCCC
EQEYLVSLTQDNPQIKVVVEMGGDRQFSFKPLADLLV
CCCEEEEEECCCCEEEEEEEECCCCEECCCCHHHHCC
>Mature Secondary Structure 
ALLTTGKSFIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYL
EEEECCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHH
TQYHGIRPPHLGKKDIAGSGAAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQ
HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCEEEEEECCCHHCCC
EQEYLVSLTQDNPQIKVVVEMGGDRQFSFKPLADLLV
CCCEEEEEECCCCEEEEEEEECCCCEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA