Click here to switch to the map view.

The map label for this gene is ubiD [C]

Identifier: 170077731

GI number: 170077731

Start: 1143361

End: 1144866

Strand: Reverse

Name: ubiD [C]

Synonym: SYNPCC7002_A1113

Alternate gene names: 170077731

Gene position: 1144866-1143361 (Counterclockwise)

Preceding gene: 170077734

Following gene: 170077730

Centisome position: 38.06

GC content: 52.79

Gene sequence:

>1506_bases
ATGGCACGGGATTTACGCGCATTTATCAAATTGGTAGAAGAACGGGGGCAACTGCGCCGCATTAAAGCTCTGGTGGATTC
GGATCTAGAAATTGCCGAGATTGCAAACCGGATGCTCCAGGTGGGTGGCCCGGCGTTGTTATTTGAGAATGTGCGGGGGA
CTTCCGTTCCGGTGGTTGTCAATCTGTTGGGGACAGTGGAGCGCATCTGTTGGGCGATGAAAATGGAAAAGCCCGAAGAA
TTGGAAGATCTAGGCCGCAAATTAGCGATGCTCCAACAGCCGAAACCCCCGAAAAAGATTTCCCAGGCCATTGATTTCGG
CAAAGTGCTGTTTGATGTGCTGAAGGCGAAACCCGGTGGTAGCTTTTTTCCCCCTTGTCAGCAGGTGGTCGTTGAGCAGG
AAGAATTAGATCTGGGTTTGATCCCGATGTTGCGCCCCTACCCGAAGGATGCGGGGAAAAATATTACTCTCGGCTTGGTG
ATTACGAAAGATTGTGAAACGGGGGTGCCCAATGTGGGGGTTTATCGCCTGCAATTGCAATCGAAAAATACGATGACGGT
GCATTGGCTCTCGGTGCGGGGTGGGGCACGTCACCTGCGGAAGGCGGCAGAAAATGGCAAAAAATTAGAGGTGGCGATCG
CCGTTGGTATTGACCCAATTTTGATCATGGCGGCGGCAACGCCGATCCCCGTGGATTTATCAGAGTGGCTGTTTGCGGGG
CTATATGGCGGTTCTGGGGTGGCATTGACCAAATGTAAAACCGTCGATCTCGAAGTCCCTGCCGATGCGGAATTTATCCT
CGAAGGCACGATTACTCCTGGGGAAATGCTACCCGATGGGCCATTTGGCGATCACATGGGCTATTACGGCGGCGTCGAGG
ATTCTCCCCTGGTGCGCTTCCACTGCCTAACCCACCGCAAGGATCCGATTTATCTGGCCACCTTTAGCGGTCGCCCTCCC
AAAGAAGAAGCGATGATGGCGATCGCCTTGAACCGGATTTATACGCCGATCCTGCGGCAACAGGTTTCCGAGATTGTCGA
TTTTTTCCTGCCGATGGAGGCCCTCAGTTACAAGGCCGCGATTATTTCCATCGACAAAGCCTATCCTGGCCAAGCCCGTC
GCGCTGCCCTTGCCTTTTGGAGTGCCCTGCCCCAATTTACCTATACGAAATTTGTGATTGTGGTGGATAAAGATGTAAAT
ATCCGCGATCCCCGTCAAGTTGTCTGGGCGATCAGTTCTAAAGTTGATCCCGTGCGGGATGTGTTTATCCTGCCGGATAC
CCCCTTCGATACCCTCGATTTTGCCAGCGAAAAAATCGGTATGGGCGGCCGCATGGGCATTGATGCGACGACAAAAATCC
CCCCCGAAACTGACCACGAGTGGGGTGAAGTCCTTGAGTCCGATCCTAAGATTGCCGAAAGGTGCGATCGCCGTTGGGCA
GAATATGGCCTCGCTGATATTGATTTAACCGCCGTTGATCCCAACAAATTTGGCTACGAAATGTAG

Upstream 100 bases:

>100_bases
TCATATTTTTATGAATACCATTGAAAAACAACAAGGTATTCTCTCCTGCAAGTATCAAAACCGTTAAGCTATATGACGTA
CTCATTTTCAGACGGCAGAC

Downstream 100 bases:

>100_bases
AAAACAATCCCGATCAAACCCAAAAATATCCTCAAAATTTCAGGGGCTAAACTCATACTTTGCCCAGCGAACAATCTGCC
TTGCCTTGATAGAATATTGA

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MARDLRAFIKLVEERGQLRRIKALVDSDLEIAEIANRMLQVGGPALLFENVRGTSVPVVVNLLGTVERICWAMKMEKPEE
LEDLGRKLAMLQQPKPPKKISQAIDFGKVLFDVLKAKPGGSFFPPCQQVVVEQEELDLGLIPMLRPYPKDAGKNITLGLV
ITKDCETGVPNVGVYRLQLQSKNTMTVHWLSVRGGARHLRKAAENGKKLEVAIAVGIDPILIMAAATPIPVDLSEWLFAG
LYGGSGVALTKCKTVDLEVPADAEFILEGTITPGEMLPDGPFGDHMGYYGGVEDSPLVRFHCLTHRKDPIYLATFSGRPP
KEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAIISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVN
IRDPRQVVWAISSKVDPVRDVFILPDTPFDTLDFASEKIGMGGRMGIDATTKIPPETDHEWGEVLESDPKIAERCDRRWA
EYGLADIDLTAVDPNKFGYEM

Sequences:

>Translated_501_residues
MARDLRAFIKLVEERGQLRRIKALVDSDLEIAEIANRMLQVGGPALLFENVRGTSVPVVVNLLGTVERICWAMKMEKPEE
LEDLGRKLAMLQQPKPPKKISQAIDFGKVLFDVLKAKPGGSFFPPCQQVVVEQEELDLGLIPMLRPYPKDAGKNITLGLV
ITKDCETGVPNVGVYRLQLQSKNTMTVHWLSVRGGARHLRKAAENGKKLEVAIAVGIDPILIMAAATPIPVDLSEWLFAG
LYGGSGVALTKCKTVDLEVPADAEFILEGTITPGEMLPDGPFGDHMGYYGGVEDSPLVRFHCLTHRKDPIYLATFSGRPP
KEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAIISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVN
IRDPRQVVWAISSKVDPVRDVFILPDTPFDTLDFASEKIGMGGRMGIDATTKIPPETDHEWGEVLESDPKIAERCDRRWA
EYGLADIDLTAVDPNKFGYEM
>Mature_500_residues
ARDLRAFIKLVEERGQLRRIKALVDSDLEIAEIANRMLQVGGPALLFENVRGTSVPVVVNLLGTVERICWAMKMEKPEEL
EDLGRKLAMLQQPKPPKKISQAIDFGKVLFDVLKAKPGGSFFPPCQQVVVEQEELDLGLIPMLRPYPKDAGKNITLGLVI
TKDCETGVPNVGVYRLQLQSKNTMTVHWLSVRGGARHLRKAAENGKKLEVAIAVGIDPILIMAAATPIPVDLSEWLFAGL
YGGSGVALTKCKTVDLEVPADAEFILEGTITPGEMLPDGPFGDHMGYYGGVEDSPLVRFHCLTHRKDPIYLATFSGRPPK
EEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAIISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVNI
RDPRQVVWAISSKVDPVRDVFILPDTPFDTLDFASEKIGMGGRMGIDATTKIPPETDHEWGEVLESDPKIAERCDRRWAE
YGLADIDLTAVDPNKFGYEM

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=488, Percent_Identity=45.9016393442623, Blast_Score=442, Evalue=1e-125,
Organism=Saccharomyces cerevisiae, GI6320748, Length=516, Percent_Identity=24.2248062015504, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55547; Mature: 55416

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARDLRAFIKLVEERGQLRRIKALVDSDLEIAEIANRMLQVGGPALLFENVRGTSVPVVV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
NLLGTVERICWAMKMEKPEELEDLGRKLAMLQQPKPPKKISQAIDFGKVLFDVLKAKPGG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SFFPPCQQVVVEQEELDLGLIPMLRPYPKDAGKNITLGLVITKDCETGVPNVGVYRLQLQ
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEE
SKNTMTVHWLSVRGGARHLRKAAENGKKLEVAIAVGIDPILIMAAATPIPVDLSEWLFAG
CCCEEEEEEEEECCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHH
LYGGSGVALTKCKTVDLEVPADAEFILEGTITPGEMLPDGPFGDHMGYYGGVEDSPLVRF
HCCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
HCLTHRKDPIYLATFSGRPPKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAA
EEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEE
IISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVNIRDPRQVVWAISSKVDPVRD
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCE
VFILPDTPFDTLDFASEKIGMGGRMGIDATTKIPPETDHEWGEVLESDPKIAERCDRRWA
EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
EYGLADIDLTAVDPNKFGYEM
HCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure 
ARDLRAFIKLVEERGQLRRIKALVDSDLEIAEIANRMLQVGGPALLFENVRGTSVPVVV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
NLLGTVERICWAMKMEKPEELEDLGRKLAMLQQPKPPKKISQAIDFGKVLFDVLKAKPGG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SFFPPCQQVVVEQEELDLGLIPMLRPYPKDAGKNITLGLVITKDCETGVPNVGVYRLQLQ
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEE
SKNTMTVHWLSVRGGARHLRKAAENGKKLEVAIAVGIDPILIMAAATPIPVDLSEWLFAG
CCCEEEEEEEEECCCHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHH
LYGGSGVALTKCKTVDLEVPADAEFILEGTITPGEMLPDGPFGDHMGYYGGVEDSPLVRF
HCCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
HCLTHRKDPIYLATFSGRPPKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAA
EEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEE
IISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVNIRDPRQVVWAISSKVDPVRD
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCE
VFILPDTPFDTLDFASEKIGMGGRMGIDATTKIPPETDHEWGEVLESDPKIAERCDRRWA
EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
EYGLADIDLTAVDPNKFGYEM
HCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]