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The map label for this gene is gcp

Identifier: 170077628

GI number: 170077628

Start: 1040008

End: 1041075

Strand: Reverse

Name: gcp

Synonym: SYNPCC7002_A1007

Alternate gene names: 170077628

Gene position: 1041075-1040008 (Counterclockwise)

Preceding gene: 170077631

Following gene: 170077626

Centisome position: 34.61

GC content: 53.0

Gene sequence:

>1068_bases
ATGAGCATTGTTTTAGCAATCGAAACAAGTTGTGATGAAACTGCCGTTGCAATTGTTAATAATCGTAAAGTTCTTGGCAA
TGTGGTTGCTTCACAAATCGACATTCATCGGGAATTTGGCGGCGTTGTGCCAGAGGTGGCATCGCGGCACCATTTAGAAA
GTATCAATGCTTGTATTGACACGGCCTTTGAGCAGTCGGGGTTGAGCTGGTCTGAAATTGAGGCGATCGCCACGACCTGT
GCGCCGGGCTTAGTGGGGGCTTTGTTGTTGGGAGCGGCCGCCGGAAAAACTCTAGCGATGATTCATAACAAGCCTTTTAT
TGGCGTTCATCACCTAGAGGGACACATTTATGCCAGCTATCTCAGCCAACCGGAGCTAGAACCGCCCTTTCTCTGCCTCT
TAGTTTCTGGGGGGCACACGAGCTTCATTGAGGTGCGCGGTTGTGGGGAATATAAACTGTTGGGGGAAACCCGTGATGAT
GCGGCTGGAGAAGCCTTTGATAAGGTGGCGCGGCTGTTGAGGGTGGGTTATCCGGGGGGGCCAGTGATTGATCGCCTGGC
CAAAACAGGTGATCCCCAGGCCTTTAAGTTGCCAGAGGGGAGAATTTCCTTACCTGGCGGGGGTTACCATCCCTACGATT
GCAGTTTTAGTGGTCTAAAAACGGCGGTGCTGCGTTTGGTGCAGCAATTTGAAACCCAGGGGAAAGCCGTGCCTGTAGCA
GATATTGCGGCCAGTTTTCAATACACCGTTGCCCAGGCTTTGACGAAACGGGCAGTACGGTGTGCGGGCGATCGCCAACT
GCAAACCATTGTGGTCGGTGGTGGTGTGGCAGCAAACAGTGGTTTACGGCAGATTTTGACTGCAGCGGCAGCGGAAGCAG
GGATTCAGGTTTATTTCCCGCCCCTCAAGTTCTGTACGGATAATGCGGCGATGATTGCCTGTGCGGCGGCGGAACATTTC
CAGAAAGGCGATCGCTCCCGGCTAGATTTGCCCGTGGCCTCCCGGTTACCGATTACCCAGGTGCAAACCCTATACACCCC
TTTAGTTCCCCTCAAGGGGAAATCTTAA

Upstream 100 bases:

>100_bases
AATCCATTTGTACTTTGGAAGCAATATTACTGTGACCAGCGTATCGAGTAAAGGCAAAAAAGGTTAAAGTTGTTAACTTA
AATCTAAGTTATACCGATAT

Downstream 100 bases:

>100_bases
GCTGCGCCACCTCCCTTAAGGGACATACACCCTCTGGCCTATCGGCCACCTCCCTCAAGGGAGGATTTTAGGCGAAGACG
GCGGTGCGGTTGCCGTAAAC

Product: putative DNA-binding/iron metalloprotein/AP endonuclease

Products: NA

Alternate protein names: Glycoprotease

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSIVLAIETSCDETAVAIVNNRKVLGNVVASQIDIHREFGGVVPEVASRHHLESINACIDTAFEQSGLSWSEIEAIATTC
APGLVGALLLGAAAGKTLAMIHNKPFIGVHHLEGHIYASYLSQPELEPPFLCLLVSGGHTSFIEVRGCGEYKLLGETRDD
AAGEAFDKVARLLRVGYPGGPVIDRLAKTGDPQAFKLPEGRISLPGGGYHPYDCSFSGLKTAVLRLVQQFETQGKAVPVA
DIAASFQYTVAQALTKRAVRCAGDRQLQTIVVGGGVAANSGLRQILTAAAAEAGIQVYFPPLKFCTDNAAMIACAAAEHF
QKGDRSRLDLPVASRLPITQVQTLYTPLVPLKGKS

Sequences:

>Translated_355_residues
MSIVLAIETSCDETAVAIVNNRKVLGNVVASQIDIHREFGGVVPEVASRHHLESINACIDTAFEQSGLSWSEIEAIATTC
APGLVGALLLGAAAGKTLAMIHNKPFIGVHHLEGHIYASYLSQPELEPPFLCLLVSGGHTSFIEVRGCGEYKLLGETRDD
AAGEAFDKVARLLRVGYPGGPVIDRLAKTGDPQAFKLPEGRISLPGGGYHPYDCSFSGLKTAVLRLVQQFETQGKAVPVA
DIAASFQYTVAQALTKRAVRCAGDRQLQTIVVGGGVAANSGLRQILTAAAAEAGIQVYFPPLKFCTDNAAMIACAAAEHF
QKGDRSRLDLPVASRLPITQVQTLYTPLVPLKGKS
>Mature_354_residues
SIVLAIETSCDETAVAIVNNRKVLGNVVASQIDIHREFGGVVPEVASRHHLESINACIDTAFEQSGLSWSEIEAIATTCA
PGLVGALLLGAAAGKTLAMIHNKPFIGVHHLEGHIYASYLSQPELEPPFLCLLVSGGHTSFIEVRGCGEYKLLGETRDDA
AGEAFDKVARLLRVGYPGGPVIDRLAKTGDPQAFKLPEGRISLPGGGYHPYDCSFSGLKTAVLRLVQQFETQGKAVPVAD
IAASFQYTVAQALTKRAVRCAGDRQLQTIVVGGGVAANSGLRQILTAAAAEAGIQVYFPPLKFCTDNAAMIACAAAEHFQ
KGDRSRLDLPVASRLPITQVQTLYTPLVPLKGKS

Specific function: Could Be A Metalloprotease. [C]

COG id: COG0533

COG function: function code O; Metal-dependent proteases with possible chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family

Homologues:

Organism=Homo sapiens, GI116812636, Length=343, Percent_Identity=36.734693877551, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI8923380, Length=348, Percent_Identity=31.3218390804598, Blast_Score=139, Evalue=6e-33,
Organism=Escherichia coli, GI1789445, Length=339, Percent_Identity=43.3628318584071, Blast_Score=264, Evalue=7e-72,
Organism=Caenorhabditis elegans, GI17557464, Length=325, Percent_Identity=31.0769230769231, Blast_Score=140, Evalue=7e-34,
Organism=Caenorhabditis elegans, GI71995670, Length=335, Percent_Identity=31.3432835820896, Blast_Score=119, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6320099, Length=348, Percent_Identity=30.1724137931034, Blast_Score=130, Evalue=4e-31,
Organism=Saccharomyces cerevisiae, GI6322891, Length=301, Percent_Identity=26.9102990033223, Blast_Score=86, Evalue=9e-18,
Organism=Drosophila melanogaster, GI20129063, Length=346, Percent_Identity=34.6820809248555, Blast_Score=182, Evalue=3e-46,
Organism=Drosophila melanogaster, GI21357207, Length=340, Percent_Identity=30.5882352941176, Blast_Score=138, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GCP_SYNP2 (B1XJF0)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734266.1
- ProteinModelPortal:   B1XJF0
- SMR:   B1XJF0
- MEROPS:   M22.001
- GeneID:   6057439
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1007
- HOGENOM:   HBG304663
- OMA:   PLYGVNH
- ProtClustDB:   PRK09604
- GO:   GO:0006508
- HAMAP:   MF_01445
- InterPro:   IPR022450
- InterPro:   IPR000905
- InterPro:   IPR017860
- InterPro:   IPR017861
- PANTHER:   PTHR11735
- PRINTS:   PR00789
- TIGRFAMs:   TIGR03723
- TIGRFAMs:   TIGR00329

Pfam domain/function: PF00814 Peptidase_M22

EC number: =3.4.24.57

Molecular weight: Translated: 37614; Mature: 37482

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS01016 GLYCOPROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVLAIETSCDETAVAIVNNRKVLGNVVASQIDIHREFGGVVPEVASRHHLESINACID
CEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TAFEQSGLSWSEIEAIATTCAPGLVGALLLGAAAGKTLAMIHNKPFIGVHHLEGHIYASY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEEH
LSQPELEPPFLCLLVSGGHTSFIEVRGCGEYKLLGETRDDAAGEAFDKVARLLRVGYPGG
HCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
PVIDRLAKTGDPQAFKLPEGRISLPGGGYHPYDCSFSGLKTAVLRLVQQFETQGKAVPVA
HHHHHHHHCCCCCEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
DIAASFQYTVAQALTKRAVRCAGDRQLQTIVVGGGVAANSGLRQILTAAAAEAGIQVYFP
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEC
PLKFCTDNAAMIACAAAEHFQKGDRSRLDLPVASRLPITQVQTLYTPLVPLKGKS
CHHHCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SIVLAIETSCDETAVAIVNNRKVLGNVVASQIDIHREFGGVVPEVASRHHLESINACID
EEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TAFEQSGLSWSEIEAIATTCAPGLVGALLLGAAAGKTLAMIHNKPFIGVHHLEGHIYASY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEEH
LSQPELEPPFLCLLVSGGHTSFIEVRGCGEYKLLGETRDDAAGEAFDKVARLLRVGYPGG
HCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
PVIDRLAKTGDPQAFKLPEGRISLPGGGYHPYDCSFSGLKTAVLRLVQQFETQGKAVPVA
HHHHHHHHCCCCCEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
DIAASFQYTVAQALTKRAVRCAGDRQLQTIVVGGGVAANSGLRQILTAAAAEAGIQVYFP
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEC
PLKFCTDNAAMIACAAAEHFQKGDRSRLDLPVASRLPITQVQTLYTPLVPLKGKS
CHHHCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA