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The map label for this gene is nusB

Identifier: 170077553

GI number: 170077553

Start: 961936

End: 962577

Strand: Direct

Name: nusB

Synonym: SYNPCC7002_A0931

Alternate gene names: 170077553

Gene position: 961936-962577 (Clockwise)

Preceding gene: 170077552

Following gene: 170077555

Centisome position: 31.98

GC content: 49.84

Gene sequence:

>642_bases
ATGCCCGCCCGTAAACAGCCCCGTAGTGTTGCCCGTGAAATTGCTCTATTGAGCTTGAGTCAGATCAAAGGCAAGCCCGA
TAAGTTAGAAGCCGTAGAGCTTGATGAATTGATGTTGGCAGCAGTTCGGACCCTGAGTAGCGAAATCCATGACATTTTAG
AGGATGCGGCGAGTGAAGTTTCCCGGGCGGAGGAGCAATTACTCAGAAGTGAAACGTTAGCGGTTAATGTCAAGAGTGCG
CGTACAATGGCCGCAGATGCCCTGGAATTGACTCGTGCGGCAATTAATCGTTTGGGTCATGTGGTGGAATTGCCAGAATT
TTTGCAGTTGACTCGCCAACATGAGGTGCGCAATTTTGCGTTAGAGATTCTCACAACCCTCCGCCGTCGCAATGATCAAA
TCAAAGAGGTCATTGACGGGTCTTTAGTGGATTGGCAATACCATCGTCTGCCCCGCTTAGACCGGGATATTTTGCGCATC
GCTGTGGCTGAAATTTTGTTTTTAGAAACGCCCTATAAAGTGGCCATCAATGAGGCCGTAGAACTGGCAAAACGCTATTC
TGACGAAGACGGCCATCGTTTTATTAACGGTGTTCTGCGCCGGGTTAGCGATCGCCTCCGGGCTGAGGACAGCCTCAAAT
AG

Upstream 100 bases:

>100_bases
CAGTCCCCAGGCGGATATGCTTTCTCTAGAGGAAGAAGTGTAGTTTAATGGTGCCTCTGAGTGACGTTGATTTTCCTTAT
TGTTTATCCCTAGTTAGACT

Downstream 100 bases:

>100_bases
ATGCCCTCTAGGTCATTATTATCTTAAGAAACTCGTCCCTAAGCCAAAAACAATACTGGTGAGCACTAATAGGAGATGTT
CGGGGGCGATCGCCACGGTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MPARKQPRSVAREIALLSLSQIKGKPDKLEAVELDELMLAAVRTLSSEIHDILEDAASEVSRAEEQLLRSETLAVNVKSA
RTMAADALELTRAAINRLGHVVELPEFLQLTRQHEVRNFALEILTTLRRRNDQIKEVIDGSLVDWQYHRLPRLDRDILRI
AVAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLRRVSDRLRAEDSLK

Sequences:

>Translated_213_residues
MPARKQPRSVAREIALLSLSQIKGKPDKLEAVELDELMLAAVRTLSSEIHDILEDAASEVSRAEEQLLRSETLAVNVKSA
RTMAADALELTRAAINRLGHVVELPEFLQLTRQHEVRNFALEILTTLRRRNDQIKEVIDGSLVDWQYHRLPRLDRDILRI
AVAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLRRVSDRLRAEDSLK
>Mature_212_residues
PARKQPRSVAREIALLSLSQIKGKPDKLEAVELDELMLAAVRTLSSEIHDILEDAASEVSRAEEQLLRSETLAVNVKSAR
TMAADALELTRAAINRLGHVVELPEFLQLTRQHEVRNFALEILTTLRRRNDQIKEVIDGSLVDWQYHRLPRLDRDILRIA
VAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLRRVSDRLRAEDSLK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_SYNP2 (B1XIZ3)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734191.1
- ProteinModelPortal:   B1XIZ3
- SMR:   B1XIZ3
- GeneID:   6056866
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0931
- HOGENOM:   HBG635304
- OMA:   GHRFING
- ProtClustDB:   PRK09634
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 24306; Mature: 24175

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARKQPRSVAREIALLSLSQIKGKPDKLEAVELDELMLAAVRTLSSEIHDILEDAASEV
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAEEQLLRSETLAVNVKSARTMAADALELTRAAINRLGHVVELPEFLQLTRQHEVRNFA
HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LEILTTLRRRNDQIKEVIDGSLVDWQYHRLPRLDRDILRIAVAEILFLETPYKVAINEAV
HHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ELAKRYSDEDGHRFINGVLRRVSDRLRAEDSLK
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PARKQPRSVAREIALLSLSQIKGKPDKLEAVELDELMLAAVRTLSSEIHDILEDAASEV
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAEEQLLRSETLAVNVKSARTMAADALELTRAAINRLGHVVELPEFLQLTRQHEVRNFA
HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LEILTTLRRRNDQIKEVIDGSLVDWQYHRLPRLDRDILRIAVAEILFLETPYKVAINEAV
HHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ELAKRYSDEDGHRFINGVLRRVSDRLRAEDSLK
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA