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The map label for this gene is pilC [H]

Identifier: 170077322

GI number: 170077322

Start: 729503

End: 730741

Strand: Direct

Name: pilC [H]

Synonym: SYNPCC7002_A0699

Alternate gene names: 170077322

Gene position: 729503-730741 (Clockwise)

Preceding gene: 170077320

Following gene: 170077323

Centisome position: 24.25

GC content: 47.86

Gene sequence:

>1239_bases
ATGGCACAGTATGTCGCACAAGTCGTTGATCGCAACGGTCAAAAGCTAAAAGAAAAAATCGAAGCCAATTCCCCCGAACA
AGCCCGCACCATGCTAGCGACGCGCTATCCAGAAGTGGGCAAGATCATGAAGCCGGGGGAAATCGATCTCTCGTTTTTAG
AAGAAGCCCTCGCGAAAGTTTCCATCAAAGATAAAGCCGTATTTTCGCGACAATTTGCGGTGATGATCAATGCTGGGGTG
GCGATCGTTCGTTGTCTAAGCATCTTGGGAGAAAACCACTCCAACATCAAGATGCGTAAAGCCCTCACTGCCATCAAGGC
CGAAGTTCAGCAGGGGGTGAATCTTTCCGACGCGATGCGACCCCACGAAGAATGCTTCGATACCCTGTATGTCAGCATGG
TAGAAGCCGGTGAAATTGGTGGGGTACTCGATGAAGTCCTAAACCGTTTGGCGAAGGTACTCGAAGACATGGCCAAACTG
GAAAACCAAATCAAATCAGCCATGACCTACCCAATGGCTGTGGCATTTTTGGCGGTGGCGGTGTTCTTTGGGATGACCGT
TTTTTTGATTCCGGTTTTTGCCGATATTTTTGAAAGTATTGGCACAGAACTGCCGGCTTTAACGATCATCATGATGGGGA
TCAGTAACTTTCTGCGGACTAGCGAAGGATTATTACCAATGCCCTTTGGGAATGTGCTCCTGATGATTATTGGTGCCAAT
ATTCTCTTTTTTGCGATCCGCCGCTACTACAACACCGAAATGGGGCGGTGGCAAATTGATTCTTTGTTACTCAAATTGCC
TCTGTTTGGGGATTTGCTCCGGAAAAATGCGGTGGCTCGGTTCTGTCGGATCTTCGGGACATTAACCCGGTCTGGGGTGC
CGATCCTCAATTCCTTTGATATTGTCGGGGCAACGGCGGGGAATGTGGTCATTGCCAAGGCGATTAATGATGCCAAGTCT
GAAATTCAAGAAGGGGGGATGTTAAGTGTTGCCCTCGATCGCGACCGGGTTTTTCCGATCCTTGCGATTCAAATGATGAC
CATTGGTGAGGAAACAGGGGAATTAGATAGCATGATGATGAAGGTGGCAGATTTCTACGAAGATGAAGTAGAGCAGACCG
TGAAGGCGCTGACCAGTATTTTAGAACCAGCGATGATGGTGATTATTGCAGCGATGGTTGGTGTTATTTTGCTATCGATG
TATCTGCCGATGTTTAAGGTATTTGAAGATTTGGGTTAG

Upstream 100 bases:

>100_bases
CTTGGGGGCTAGCCCAACCGCAAAACGTCGCTAAATAAATATTGTCAGTTAAGCTGGCAAAAGACACCCTTTATTCCATT
TTTCCCAGTGAACGAAAGCC

Downstream 100 bases:

>100_bases
AACAAACGATGACCGGACAGCAAAGTCAGTATGAAACGCTTTTAGCGGCCTACAGTGATCGACAAACGGCGATCGCCTTA
CTGAAGCAACATCGCCCTTA

Product: type IV pilus biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MAQYVAQVVDRNGQKLKEKIEANSPEQARTMLATRYPEVGKIMKPGEIDLSFLEEALAKVSIKDKAVFSRQFAVMINAGV
AIVRCLSILGENHSNIKMRKALTAIKAEVQQGVNLSDAMRPHEECFDTLYVSMVEAGEIGGVLDEVLNRLAKVLEDMAKL
ENQIKSAMTYPMAVAFLAVAVFFGMTVFLIPVFADIFESIGTELPALTIIMMGISNFLRTSEGLLPMPFGNVLLMIIGAN
ILFFAIRRYYNTEMGRWQIDSLLLKLPLFGDLLRKNAVARFCRIFGTLTRSGVPILNSFDIVGATAGNVVIAKAINDAKS
EIQEGGMLSVALDRDRVFPILAIQMMTIGEETGELDSMMMKVADFYEDEVEQTVKALTSILEPAMMVIIAAMVGVILLSM
YLPMFKVFEDLG

Sequences:

>Translated_412_residues
MAQYVAQVVDRNGQKLKEKIEANSPEQARTMLATRYPEVGKIMKPGEIDLSFLEEALAKVSIKDKAVFSRQFAVMINAGV
AIVRCLSILGENHSNIKMRKALTAIKAEVQQGVNLSDAMRPHEECFDTLYVSMVEAGEIGGVLDEVLNRLAKVLEDMAKL
ENQIKSAMTYPMAVAFLAVAVFFGMTVFLIPVFADIFESIGTELPALTIIMMGISNFLRTSEGLLPMPFGNVLLMIIGAN
ILFFAIRRYYNTEMGRWQIDSLLLKLPLFGDLLRKNAVARFCRIFGTLTRSGVPILNSFDIVGATAGNVVIAKAINDAKS
EIQEGGMLSVALDRDRVFPILAIQMMTIGEETGELDSMMMKVADFYEDEVEQTVKALTSILEPAMMVIIAAMVGVILLSM
YLPMFKVFEDLG
>Mature_411_residues
AQYVAQVVDRNGQKLKEKIEANSPEQARTMLATRYPEVGKIMKPGEIDLSFLEEALAKVSIKDKAVFSRQFAVMINAGVA
IVRCLSILGENHSNIKMRKALTAIKAEVQQGVNLSDAMRPHEECFDTLYVSMVEAGEIGGVLDEVLNRLAKVLEDMAKLE
NQIKSAMTYPMAVAFLAVAVFFGMTVFLIPVFADIFESIGTELPALTIIMMGISNFLRTSEGLLPMPFGNVLLMIIGANI
LFFAIRRYYNTEMGRWQIDSLLLKLPLFGDLLRKNAVARFCRIFGTLTRSGVPILNSFDIVGATAGNVVIAKAINDAKSE
IQEGGMLSVALDRDRVFPILAIQMMTIGEETGELDSMMMKVADFYEDEVEQTVKALTSILEPAMMVIIAAMVGVILLSMY
LPMFKVFEDLG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=408, Percent_Identity=26.9607843137255, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1786295, Length=340, Percent_Identity=29.1176470588235, Blast_Score=147, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45469; Mature: 45337

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYVAQVVDRNGQKLKEKIEANSPEQARTMLATRYPEVGKIMKPGEIDLSFLEEALAKV
CHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
SIKDKAVFSRQFAVMINAGVAIVRCLSILGENHSNIKMRKALTAIKAEVQQGVNLSDAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCC
PHEECFDTLYVSMVEAGEIGGVLDEVLNRLAKVLEDMAKLENQIKSAMTYPMAVAFLAVA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFFGMTVFLIPVFADIFESIGTELPALTIIMMGISNFLRTSEGLLPMPFGNVLLMIIGAN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ILFFAIRRYYNTEMGRWQIDSLLLKLPLFGDLLRKNAVARFCRIFGTLTRSGVPILNSFD
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
IVGATAGNVVIAKAINDAKSEIQEGGMLSVALDRDRVFPILAIQMMTIGEETGELDSMMM
CCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHH
KVADFYEDEVEQTVKALTSILEPAMMVIIAAMVGVILLSMYLPMFKVFEDLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQYVAQVVDRNGQKLKEKIEANSPEQARTMLATRYPEVGKIMKPGEIDLSFLEEALAKV
HHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
SIKDKAVFSRQFAVMINAGVAIVRCLSILGENHSNIKMRKALTAIKAEVQQGVNLSDAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCC
PHEECFDTLYVSMVEAGEIGGVLDEVLNRLAKVLEDMAKLENQIKSAMTYPMAVAFLAVA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFFGMTVFLIPVFADIFESIGTELPALTIIMMGISNFLRTSEGLLPMPFGNVLLMIIGAN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ILFFAIRRYYNTEMGRWQIDSLLLKLPLFGDLLRKNAVARFCRIFGTLTRSGVPILNSFD
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
IVGATAGNVVIAKAINDAKSEIQEGGMLSVALDRDRVFPILAIQMMTIGEETGELDSMMM
CCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHH
KVADFYEDEVEQTVKALTSILEPAMMVIIAAMVGVILLSMYLPMFKVFEDLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]