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The map label for this gene is yjgF [C]

Identifier: 170077241

GI number: 170077241

Start: 646990

End: 647376

Strand: Direct

Name: yjgF [C]

Synonym: SYNPCC7002_A0617

Alternate gene names: 170077241

Gene position: 646990-647376 (Clockwise)

Preceding gene: 170077240

Following gene: 170077262

Centisome position: 21.51

GC content: 49.87

Gene sequence:

>387_bases
ATGGAAAAACAAGTTATTCAAACTAATCATGCCCCCGCCCCCGTTGGCCCCTATAACCAGGCGATCGCCGCTTCAGGCAA
GATGTTATTTTGTTCTGGCCAAATTGCCCTTGATCCCGCCACGGGCCAAATTATTGAGGGGGATGTCCAAGCCCAAACGA
AACAAGTCATGGCAAATTTAGCGGCGGTGTTAAAAGAAGCTGGCGCCACCTGGGAAAATGTTGTGAAAACGGGCGTTTTT
CTCAAGGATATGAATGATTTTGCGGCGGTTAATGCTGTGTATGCCACCTACTTTGATGAAGCCACTGCCCCCGCCCGCGC
TTGCGTAGAAGTAGCGCGTCTGCCAAAGGATGTCCTCGTCGAAATTGAATGTATTGCCGTGCTTTAA

Upstream 100 bases:

>100_bases
CATTTTGCAGGATTATTGGTCTTACCGCCACCACGGGATGCGTCCCCGTTTGGGTGCTTAACGTGATCTGCAATTTTTTA
ACGGTTTTAAGAATTTAGTG

Downstream 100 bases:

>100_bases
ACACACAACTAAAGCTGCATTTTTTTAAAGCCTTACCCAAAGAAAAACCTCCACTTCTCATCGGAAATGGAGGCTCTTTT
TGTATTTCTATGATGCTTGT

Product: endoribonuclease L-PSP, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MEKQVIQTNHAPAPVGPYNQAIAASGKMLFCSGQIALDPATGQIIEGDVQAQTKQVMANLAAVLKEAGATWENVVKTGVF
LKDMNDFAAVNAVYATYFDEATAPARACVEVARLPKDVLVEIECIAVL

Sequences:

>Translated_128_residues
MEKQVIQTNHAPAPVGPYNQAIAASGKMLFCSGQIALDPATGQIIEGDVQAQTKQVMANLAAVLKEAGATWENVVKTGVF
LKDMNDFAAVNAVYATYFDEATAPARACVEVARLPKDVLVEIECIAVL
>Mature_128_residues
MEKQVIQTNHAPAPVGPYNQAIAASGKMLFCSGQIALDPATGQIIEGDVQAQTKQVMANLAAVLKEAGATWENVVKTGVF
LKDMNDFAAVNAVYATYFDEATAPARACVEVARLPKDVLVEIECIAVL

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=44.8, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=52.3809523809524, Blast_Score=125, Evalue=7e-31,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=48.8188976377953, Blast_Score=121, Evalue=1e-29,
Organism=Escherichia coli, GI1787245, Length=126, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=51.2, Blast_Score=121, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=51.2, Blast_Score=121, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=51.2, Blast_Score=121, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=39.344262295082, Blast_Score=90, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=41.5841584158416, Blast_Score=83, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=46.4, Blast_Score=113, Evalue=4e-26,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13580; Mature: 13580

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQVIQTNHAPAPVGPYNQAIAASGKMLFCSGQIALDPATGQIIEGDVQAQTKQVMANL
CCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCEEECCCCCCEEECHHHHHHHHHHHHH
AAVLKEAGATWENVVKTGVFLKDMNDFAAVNAVYATYFDEATAPARACVEVARLPKDVLV
HHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHEE
EIECIAVL
EEEEEEEC
>Mature Secondary Structure
MEKQVIQTNHAPAPVGPYNQAIAASGKMLFCSGQIALDPATGQIIEGDVQAQTKQVMANL
CCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCEEECCCCCCEEECHHHHHHHHHHHHH
AAVLKEAGATWENVVKTGVFLKDMNDFAAVNAVYATYFDEATAPARACVEVARLPKDVLV
HHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHEE
EIECIAVL
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]