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The map label for this gene is cpcG [H]

Identifier: 170077262

GI number: 170077262

Start: 671017

End: 671745

Strand: Direct

Name: cpcG [H]

Synonym: SYNPCC7002_A0639

Alternate gene names: 170077262

Gene position: 671017-671745 (Clockwise)

Preceding gene: 170077241

Following gene: 170077266

Centisome position: 22.31

GC content: 44.86

Gene sequence:

>729_bases
ATGACTATACCTCTATTGACCTACGAACCAAGCTCTCAGAATCAACGGGTACAAGATTTTTTTATCGGCAGTGAAGAAAG
TCCCAAGCAATTTAGCGTGGAATCGGCTTTTGCAAAAACAGATTTTGAGACCTTAATCCAGGCGGCCTATCGTCAAATTT
TCAATGAGCAGCAGATGCTTGAACAAAATCGCCTGAAAGTTCAAGAATCTAAGCTGAAATCAGGTTTTATTACCGTTCAA
GACTTTATCCGGGCGTTGTTATTGTCTGAGTCTTTTCGGCAACGGAACTATGACGTGAACAATAACTATCGCTTTGTGCG
GATGTGCGTGCAGCGGGTACTGGGCCGGGATGTTTATGGTCAGAAAGAGGTTCTTTCTTGGTCAATTTTGTTGGCGACCC
AGGGCTTAAATGGCTTTGTGAATGCTCTCTTAAACTCTGAGGAATATCTCGACAATTTTGGCTTAGATACTGTTCCTTAT
CAGCGGCGACGCATCTTACCCCAACGCACAGAAGGAAATTTACCCTTTGCACGGATGCCCCGTTATGACGCTGATTATCG
TCAACAATTAGAAGATCTGGGCTATTTCCAAGAACGGGATGAAACGCCATGGGTTGCTCCTACTTGGGTCAGTGTAATTG
GGAAAACGGTTACCATTGCTGGAGCTGGCACCTTGATTTTAGGGGCGATCGCCGTTGCTTTGGCCGCTTTTGAAATCATT
AAGCTGTAG

Upstream 100 bases:

>100_bases
TTAAAAAAAGCAACTTTCCCGAAACTTTGCCTGGTCTAGTCTATAGTTTTTATAAACTTAATTCTTTTCATTTTCTAAAG
TCAATACTTACTATAAAAAA

Downstream 100 bases:

>100_bases
GCCTATGGCTCGATTGAGGGCAAGACTTCAATTCCTTGCACAATACATAAATTTCAACCTCAAGACCGAACAGGAGCAGA
TCTTGGGGTTTGGTTCATTC

Product: phycocyanin-associated phycobilisome rod-core linker polypeptide

Products: NA

Alternate protein names: L-RC 28.5 [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTIPLLTYEPSSQNQRVQDFFIGSEESPKQFSVESAFAKTDFETLIQAAYRQIFNEQQMLEQNRLKVQESKLKSGFITVQ
DFIRALLLSESFRQRNYDVNNNYRFVRMCVQRVLGRDVYGQKEVLSWSILLATQGLNGFVNALLNSEEYLDNFGLDTVPY
QRRRILPQRTEGNLPFARMPRYDADYRQQLEDLGYFQERDETPWVAPTWVSVIGKTVTIAGAGTLILGAIAVALAAFEII
KL

Sequences:

>Translated_242_residues
MTIPLLTYEPSSQNQRVQDFFIGSEESPKQFSVESAFAKTDFETLIQAAYRQIFNEQQMLEQNRLKVQESKLKSGFITVQ
DFIRALLLSESFRQRNYDVNNNYRFVRMCVQRVLGRDVYGQKEVLSWSILLATQGLNGFVNALLNSEEYLDNFGLDTVPY
QRRRILPQRTEGNLPFARMPRYDADYRQQLEDLGYFQERDETPWVAPTWVSVIGKTVTIAGAGTLILGAIAVALAAFEII
KL
>Mature_241_residues
TIPLLTYEPSSQNQRVQDFFIGSEESPKQFSVESAFAKTDFETLIQAAYRQIFNEQQMLEQNRLKVQESKLKSGFITVQD
FIRALLLSESFRQRNYDVNNNYRFVRMCVQRVLGRDVYGQKEVLSWSILLATQGLNGFVNALLNSEEYLDNFGLDTVPYQ
RRRILPQRTEGNLPFARMPRYDADYRQQLEDLGYFQERDETPWVAPTWVSVIGKTVTIAGAGTLILGAIAVALAAFEIIK
L

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 27843; Mature: 27712

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPLLTYEPSSQNQRVQDFFIGSEESPKQFSVESAFAKTDFETLIQAAYRQIFNEQQML
CCCCEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EQNRLKVQESKLKSGFITVQDFIRALLLSESFRQRNYDVNNNYRFVRMCVQRVLGRDVYG
HHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
QKEVLSWSILLATQGLNGFVNALLNSEEYLDNFGLDTVPYQRRRILPQRTEGNLPFARMP
CHHHHHHHHHEECCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHCC
RYDADYRQQLEDLGYFQERDETPWVAPTWVSVIGKTVTIAGAGTLILGAIAVALAAFEII
CCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHCCHHEECCHHHHHHHHHHHHHHHHHHH
KL
CC
>Mature Secondary Structure 
TIPLLTYEPSSQNQRVQDFFIGSEESPKQFSVESAFAKTDFETLIQAAYRQIFNEQQML
CCCEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EQNRLKVQESKLKSGFITVQDFIRALLLSESFRQRNYDVNNNYRFVRMCVQRVLGRDVYG
HHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
QKEVLSWSILLATQGLNGFVNALLNSEEYLDNFGLDTVPYQRRRILPQRTEGNLPFARMP
CHHHHHHHHHEECCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHCC
RYDADYRQQLEDLGYFQERDETPWVAPTWVSVIGKTVTIAGAGTLILGAIAVALAAFEII
CCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHCCHHEECCHHHHHHHHHHHHHHHHHHH
KL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2164365 [H]