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The map label for this gene is rpaB [H]

Identifier: 170077111

GI number: 170077111

Start: 517258

End: 518034

Strand: Direct

Name: rpaB [H]

Synonym: SYNPCC7002_A0486

Alternate gene names: 170077111

Gene position: 517258-518034 (Clockwise)

Preceding gene: 170077107

Following gene: 170077112

Centisome position: 17.2

GC content: 51.74

Gene sequence:

>777_bases
TTGCAACAAGGAGTCCCGTCCATCGTGGTAGACAACAAGGCAACCATCCTCGTAGTCGATGACGAAATCGCCGTACGTCG
TATCTTACAAACTCGTTTATCCATGATTGGCTACGACATTATCACTGCTGCCGATGGTGATGAAGCCCTCGACATTTTTT
GGCGTGAAGATCCTGATTTAGTCATCCTGGATGTGATGATGCCCAAGCGCGATGGGTATTACGTCTGCCAAGAAATTCGC
CGCGAATCTAGTACACCGATCATCATGTTGACGGCCCTTGGGGATGTGGCCGACCGGATTACGGGATTGCGCTTTGGGGC
CGATGATTATTTGATCAAACCATTTTCGCCCAAGGAATTGGAGGTGCGGATCCAATGTATTTTGCGGCGCACCCAAAAAA
CGCTGCCCCCCACGGAGGAAGCGGGTATTTTACGGACGGCCAACCTAGTGATTGATACGAATCGCCGCAAGGTGACCCAA
AATAATAAGCCCCTGCGGTTAACCCACATTGAATTTAATTTGCTGGAATTGCTCGTGAACCAAGCGGGACAACCCCTAAG
CCGCACGGATATTTTGACGGCGATCTGGGGTTATGTGCCCCGCCGCCACAGTGATTTGCGGGTGGTGGATGTCCATGTAT
CGCGCCTGCGCTCGAAGATTGAGCAGGATCCACGCCAGCCAGAATTTATCATTACAGAACGGGGCACAGGCTATCTGTTT
CGGAAACTGCCAGTGGCGATCGCCGCGAATGTATCTTCTTCTATGGCGGCATCGTAG

Upstream 100 bases:

>100_bases
GCCTTTGTATTTTGCCCTATCTTGGCTTGGCACGACAAAAAGGATCTTGCTATACTTCTTGTAACGAAATGTAAAGAATC
ATTTCTAAGAAATCCCACCG

Downstream 100 bases:

>100_bases
TGGAGTTGATTTCAAAAAAAGCTCAGGAGAGTTAGACATAAGCCGGGTTCTGTTCTCTTGCAGCGCAAAAGGGCAGTTAT
CTATCTAGGATGACTGTTAC

Product: two-component response regulator (ycf27)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MQQGVPSIVVDNKATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDGYYVCQEIR
RESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQKTLPPTEEAGILRTANLVIDTNRRKVTQ
NNKPLRLTHIEFNLLELLVNQAGQPLSRTDILTAIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLF
RKLPVAIAANVSSSMAAS

Sequences:

>Translated_258_residues
MQQGVPSIVVDNKATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDGYYVCQEIR
RESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQKTLPPTEEAGILRTANLVIDTNRRKVTQ
NNKPLRLTHIEFNLLELLVNQAGQPLSRTDILTAIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLF
RKLPVAIAANVSSSMAAS
>Mature_258_residues
MQQGVPSIVVDNKATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDGYYVCQEIR
RESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQKTLPPTEEAGILRTANLVIDTNRRKVTQ
NNKPLRLTHIEFNLLELLVNQAGQPLSRTDILTAIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLF
RKLPVAIAANVSSSMAAS

Specific function: Member of the two-component regulatory system walK/walR that regulates genes involved in autolysis, biofilm formation and cell wall metabolism [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=38.4279475982533, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=36.283185840708, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=36.7965367965368, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=39.5555555555556, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=35.8407079646018, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1788394, Length=228, Percent_Identity=36.8421052631579, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=32.7510917030568, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=38.4279475982533, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789402, Length=224, Percent_Identity=34.8214285714286, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790860, Length=233, Percent_Identity=31.7596566523605, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=31.8777292576419, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787375, Length=233, Percent_Identity=32.1888412017167, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=34.3347639484979, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1790552, Length=229, Percent_Identity=31.8777292576419, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788550, Length=111, Percent_Identity=42.3423423423423, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787487, Length=100, Percent_Identity=38, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790437, Length=118, Percent_Identity=36.4406779661017, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693157, Length=102, Percent_Identity=40.1960784313725, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790299, Length=127, Percent_Identity=29.1338582677165, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788905, Length=128, Percent_Identity=34.375, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788191, Length=126, Percent_Identity=31.7460317460317, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788713, Length=110, Percent_Identity=37.2727272727273, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 29217; Mature: 29217

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQGVPSIVVDNKATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDL
CCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCE
VILDVMMPKRDGYYVCQEIRRESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKEL
EEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCEEECCCCCEECCCCCCHH
EVRIQCILRRTQKTLPPTEEAGILRTANLVIDTNRRKVTQNNKPLRLTHIEFNLLELLVN
HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEECCCCCCEEEEEEHHHHHHHHHH
QAGQPLSRTDILTAIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLF
HCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCEEE
RKLPVAIAANVSSSMAAS
HHCCEEEEECCCHHHCCC
>Mature Secondary Structure
MQQGVPSIVVDNKATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDL
CCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCE
VILDVMMPKRDGYYVCQEIRRESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKEL
EEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCEEECCCCCEECCCCCCHH
EVRIQCILRRTQKTLPPTEEAGILRTANLVIDTNRRKVTQNNKPLRLTHIEFNLLELLVN
HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEECCCCCCEEEEEEHHHHHHHHHH
QAGQPLSRTDILTAIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLF
HCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCEEE
RKLPVAIAANVSSSMAAS
HHCCEEEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA