Click here to switch to the map view.

The map label for this gene is 170076878

Identifier: 170076878

GI number: 170076878

Start: 262478

End: 263353

Strand: Direct

Name: 170076878

Synonym: SYNPCC7002_A0249

Alternate gene names: NA

Gene position: 262478-263353 (Clockwise)

Preceding gene: 170076875

Following gene: 170076883

Centisome position: 8.73

GC content: 32.42

Gene sequence:

>876_bases
ATGAAAATTAGTGCAGAAATCGAAAAACTATCTTTTGTCGAGTGGTCGGACTTAAGGCAGCTTCCAAATTGTCCAGCTAT
TTACTTTGTTGTTGATTCGAAAAATATCATTCAATACATTGGTCAGGCAAAAGATTTAGAAAAAAGGTGGAGAAACCATC
ATCGTAAGTTTCAATTGGATCAAATCAATGAAAAATATCCAATTAGATTATATTGGATTATTTTAAATCTAGATGATTTA
AAAACTGCGGAAAAACATTTTATTGAGAAATACAAACCATTACTCAATTCTACAATTGTTGAAACACCTGAAGTTATTCC
GTCTGAAGTTATTTTGAAGCAGTTGTTGCGAAAAATTGCACGTAAAATCTGTGTTATTGGGATATCTGAAAATCCTAGTA
GTCGCTTAAAGACAGTTTATGCTAAATTCGACGCTCAAAATTGTACAAAAAAAGGAGCAGCGGCAATCATCAAAAAGTTT
CAAGCAGAAAATAAAGGTTCTTCTTTAAAAATAAAAAAAACTAAATATGTAAGCAAAATCTATGGCGAAGTTTATCGTGT
TGGCAGTAGAAAAGCACGTAGGCAAGCATTAGAAAATCGCACCTATAATAATCATTGGGAAATCGGATGCAATGGCGTAA
TAATTGACATTACTCCAGAAAATGGTCTGCATCAGTTGGCTTTCTTTAAAGAGAGAGCTATTCCTTGGAAATTGGCAAAT
GTCACCATTCGCGCATTGAAATCTGAAGATTTTTTAGAAATACAAGAAAAAACTCTTATCTCACATTATAAATGTCAAGA
ATTATCTCCAATAAACATCAATATTGATCCTATTCCTATTCTGTGGAAGAACTGGGAGTCTAAACTTAAAGAATGA

Upstream 100 bases:

>100_bases
CGGCCAAGTTTTTGTTCTAAAGCGGCGATCATCGTTTATTTTTAGTTTAGTAATTTGAAGTTTTTCAATATATTTGGACA
AATAAAAGGAGTATCACAGC

Downstream 100 bases:

>100_bases
ATTTTATAATTCAGTTCCAATAATACCGACCGACAGGACTGGCAATGTAAATTGAGCTATTGTATTGGGCCGTAGGAAAA
TCCCCTCCCCAAGACGGTGG

Product: exinuclease activity

Products: NA

Alternate protein names: Excinuclease ABC Subunit C Domain-Containing Protein; Exinuclease Activity; Excinuclease ABC C Subunit Domain-Containing Protein

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKISAEIEKLSFVEWSDLRQLPNCPAIYFVVDSKNIIQYIGQAKDLEKRWRNHHRKFQLDQINEKYPIRLYWIILNLDDL
KTAEKHFIEKYKPLLNSTIVETPEVIPSEVILKQLLRKIARKICVIGISENPSSRLKTVYAKFDAQNCTKKGAAAIIKKF
QAENKGSSLKIKKTKYVSKIYGEVYRVGSRKARRQALENRTYNNHWEIGCNGVIIDITPENGLHQLAFFKERAIPWKLAN
VTIRALKSEDFLEIQEKTLISHYKCQELSPININIDPIPILWKNWESKLKE

Sequences:

>Translated_291_residues
MKISAEIEKLSFVEWSDLRQLPNCPAIYFVVDSKNIIQYIGQAKDLEKRWRNHHRKFQLDQINEKYPIRLYWIILNLDDL
KTAEKHFIEKYKPLLNSTIVETPEVIPSEVILKQLLRKIARKICVIGISENPSSRLKTVYAKFDAQNCTKKGAAAIIKKF
QAENKGSSLKIKKTKYVSKIYGEVYRVGSRKARRQALENRTYNNHWEIGCNGVIIDITPENGLHQLAFFKERAIPWKLAN
VTIRALKSEDFLEIQEKTLISHYKCQELSPININIDPIPILWKNWESKLKE
>Mature_291_residues
MKISAEIEKLSFVEWSDLRQLPNCPAIYFVVDSKNIIQYIGQAKDLEKRWRNHHRKFQLDQINEKYPIRLYWIILNLDDL
KTAEKHFIEKYKPLLNSTIVETPEVIPSEVILKQLLRKIARKICVIGISENPSSRLKTVYAKFDAQNCTKKGAAAIIKKF
QAENKGSSLKIKKTKYVSKIYGEVYRVGSRKARRQALENRTYNNHWEIGCNGVIIDITPENGLHQLAFFKERAIPWKLAN
VTIRALKSEDFLEIQEKTLISHYKCQELSPININIDPIPILWKNWESKLKE

Specific function: Unknown

COG id: COG0322

COG function: function code L; Nuclease subunit of the excinuclease complex

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34022; Mature: 34022

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISAEIEKLSFVEWSDLRQLPNCPAIYFVVDSKNIIQYIGQAKDLEKRWRNHHRKFQLD
CCCCCCHHHHCCCCHHHHHHCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHCCEEEHH
QINEKYPIRLYWIILNLDDLKTAEKHFIEKYKPLLNSTIVETPEVIPSEVILKQLLRKIA
HCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RKICVIGISENPSSRLKTVYAKFDAQNCTKKGAAAIIKKFQAENKGSSLKIKKTKYVSKI
HHHEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHH
YGEVYRVGSRKARRQALENRTYNNHWEIGCNGVIIDITPENGLHQLAFFKERAIPWKLAN
HHHHHHHCCHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHCCCEEHHH
VTIRALKSEDFLEIQEKTLISHYKCQELSPININIDPIPILWKNWESKLKE
HHHEECCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEECCHHHHHCC
>Mature Secondary Structure
MKISAEIEKLSFVEWSDLRQLPNCPAIYFVVDSKNIIQYIGQAKDLEKRWRNHHRKFQLD
CCCCCCHHHHCCCCHHHHHHCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHCCEEEHH
QINEKYPIRLYWIILNLDDLKTAEKHFIEKYKPLLNSTIVETPEVIPSEVILKQLLRKIA
HCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RKICVIGISENPSSRLKTVYAKFDAQNCTKKGAAAIIKKFQAENKGSSLKIKKTKYVSKI
HHHEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHH
YGEVYRVGSRKARRQALENRTYNNHWEIGCNGVIIDITPENGLHQLAFFKERAIPWKLAN
HHHHHHHCCHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHCCCEEHHH
VTIRALKSEDFLEIQEKTLISHYKCQELSPININIDPIPILWKNWESKLKE
HHHEECCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA