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The map label for this gene is 170076859

Identifier: 170076859

GI number: 170076859

Start: 239750

End: 240772

Strand: Direct

Name: 170076859

Synonym: SYNPCC7002_A0229

Alternate gene names: NA

Gene position: 239750-240772 (Clockwise)

Preceding gene: 170076858

Following gene: 170076860

Centisome position: 7.97

GC content: 52.0

Gene sequence:

>1023_bases
ATGACTTCAGTTTTAGGTCTATTAAAACCCTTAAAAAAAGCCATTGCGGCGATCGCCGTTTTGGTATTGTGCATCGGCTG
TGTCCAGGCACCAACCATTAGCGAAAATCCCTGGCAAGAAATCGACTTAAATACCGATTCGACCTTTGCCAATATTGCTT
TTACCGACGACCTCCAACATGGCTGGCTTGTCGGTACCAAAGAAACCCTCTTTGAAACTACCGATGGCGGCAAAACCTGG
GCCGAGCGAGTTATTGATCTCGGTGACGAAAAAGAAAGTTTTACCGGTGTTAGCTTCTCTGGCCAAGAAGGCTGGATTAC
CGGACGGCCTTCGATCCTGCTCCACACCGACGATGGTGGTGAGCACTGGAGTCGCATCGCCCTCAGCAGTCAATTGCCCG
GTGCCCCCTACAACATCACCGCCCTAGGGCCGAACACCGCCGAAATGGTCACCGATCTTGGGGCCATTTACAAAACCACC
GACGGCGGCAAAAACTGGAAAGCCCTTGTCGAAGGTGCCGTTGGCGTTGCCCGCACCATTGAACGTTCTGCCGATGGTAA
ATATGTGGCCGTTTCTGCCCGGGGTAATTTTTATTCCACTTGGTCGCCTGGGGACACAGAATGGACGCCCCATAACCGGA
ATTCTTCCCGTCGCCTCCAAAGCATGGGCTTTAATGGCGAAGATAAGCTCTGGTTGTTAGCCCGTGGGGGAGTTGTGCAA
TTTAGCGACGATACAAATCCAGACAATGCAGAAGCCTGGAGCGAACCAGTGACACCGCAGTACCGCAACAGTGTTGGTTT
GTTGCACATTGGCTATCGTACCCCCGCAGAACTATGGGCCGTCGGTGGTAGTGGCAGTGTTGTTGTGAGTAAAGATGGTG
GCGACACTTGGTTCCGGGACGCTGCCCTAGAAGAGATCCCGACAAACTTTTACCGAGTCGTTTTCTTAAATGAGAATAAA
GGCTTCATCCTTGGGCAACAGGGGGTGATTTTACGGTACGATACATCCACGGAAGCGGCCTAA

Upstream 100 bases:

>100_bases
TCCTTTTCTTCCTGAGCCTTTATGGTCTGGACTAAAGACCCCCATAGCAAAGCCTTGTCTTAATTCCAAATTTTTACTTT
TATTGCTTTTATATTGCGCT

Downstream 100 bases:

>100_bases
GGGCAACCCATTCTATTGTGGGAGTGTCTGTTAATTCCGTATGATATAGGCTAATTTGTTTAATAAGTTTTTTTTCATTA
ACAATTGAGAGGAGAATAGT

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTSVLGLLKPLKKAIAAIAVLVLCIGCVQAPTISENPWQEIDLNTDSTFANIAFTDDLQHGWLVGTKETLFETTDGGKTW
AERVIDLGDEKESFTGVSFSGQEGWITGRPSILLHTDDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKTT
DGGKNWKALVEGAVGVARTIERSADGKYVAVSARGNFYSTWSPGDTEWTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQ
FSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENK
GFILGQQGVILRYDTSTEAA

Sequences:

>Translated_340_residues
MTSVLGLLKPLKKAIAAIAVLVLCIGCVQAPTISENPWQEIDLNTDSTFANIAFTDDLQHGWLVGTKETLFETTDGGKTW
AERVIDLGDEKESFTGVSFSGQEGWITGRPSILLHTDDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKTT
DGGKNWKALVEGAVGVARTIERSADGKYVAVSARGNFYSTWSPGDTEWTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQ
FSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENK
GFILGQQGVILRYDTSTEAA
>Mature_339_residues
TSVLGLLKPLKKAIAAIAVLVLCIGCVQAPTISENPWQEIDLNTDSTFANIAFTDDLQHGWLVGTKETLFETTDGGKTWA
ERVIDLGDEKESFTGVSFSGQEGWITGRPSILLHTDDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKTTD
GGKNWKALVEGAVGVARTIERSADGKYVAVSARGNFYSTWSPGDTEWTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQF
SDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENKG
FILGQQGVILRYDTSTEAA

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YC48L_SYNP2 (Q8RSW4)

Other databases:

- EMBL:   AY075046
- EMBL:   CP000951
- RefSeq:   YP_001733497.1
- ProteinModelPortal:   Q8RSW4
- GeneID:   6057553
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0229
- HOGENOM:   HBG285032
- OMA:   GFLVGSN
- ProtClustDB:   PRK13684
- HAMAP:   MF_01348
- InterPro:   IPR002860
- InterPro:   IPR016705
- PIRSF:   PIRSF017875

Pfam domain/function: PF02012 BNR

EC number: NA

Molecular weight: Translated: 36921; Mature: 36790

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVLGLLKPLKKAIAAIAVLVLCIGCVQAPTISENPWQEIDLNTDSTFANIAFTDDLQH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEEEECCCCC
GWLVGTKETLFETTDGGKTWAERVIDLGDEKESFTGVSFSGQEGWITGRPSILLHTDDGG
CEEEECHHHEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCCEEEEEECCCC
EHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKTTDGGKNWKALVEGAVGVARTI
CHHHHEEECCCCCCCCEEEEEECCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
ERSADGKYVAVSARGNFYSTWSPGDTEWTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQ
HHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCEEE
FSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRD
ECCCCCCCCHHHCCCCCCHHHHCCEEEEEECCCCCHHHEEECCCCCEEEECCCCCCHHHH
AALEEIPTNFYRVVFLNENKGFILGQQGVILRYDTSTEAA
HHHHHCCCCEEEEEEEECCCCEEEECCCEEEEECCCCCCC
>Mature Secondary Structure 
TSVLGLLKPLKKAIAAIAVLVLCIGCVQAPTISENPWQEIDLNTDSTFANIAFTDDLQH
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEEEECCCCC
GWLVGTKETLFETTDGGKTWAERVIDLGDEKESFTGVSFSGQEGWITGRPSILLHTDDGG
CEEEECHHHEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCCEEEEEECCCC
EHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKTTDGGKNWKALVEGAVGVARTI
CHHHHEEECCCCCCCCEEEEEECCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
ERSADGKYVAVSARGNFYSTWSPGDTEWTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQ
HHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCEEE
FSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRD
ECCCCCCCCHHHCCCCCCHHHHCCEEEEEECCCCCHHHEEECCCCCEEEECCCCCCHHHH
AALEEIPTNFYRVVFLNENKGFILGQQGVILRYDTSTEAA
HHHHHCCCCEEEEEEEECCCCEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11914373