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The map label for this gene is psbE

Identifier: 170076860

GI number: 170076860

Start: 240876

End: 241121

Strand: Direct

Name: psbE

Synonym: SYNPCC7002_A0230

Alternate gene names: 170076860

Gene position: 240876-241121 (Clockwise)

Preceding gene: 170076859

Following gene: 170076861

Centisome position: 8.01

GC content: 44.72

Gene sequence:

>246_bases
ATGGCAGGTTCTACCGGAGAACGCCCGTTTTCTGACATTGTGACCAGTATTCGCTACTGGGTTATTCACAGCATCACCAT
TCCGATGTTATTTATTGCTGGCTGGCTCTTTGTGAGCACTGGCTTGGCTTACGATACTTTCGGGACACCCCGTCCTGACC
AATACTTTACTGAAACTCGTCAAGAGATTCCCATTGTGACTGATCGTTACAAAGCGATTGATCAGATCAATGAGTTTAAC
AATTAA

Upstream 100 bases:

>100_bases
CAACCCATTCTATTGTGGGAGTGTCTGTTAATTCCGTATGATATAGGCTAATTTGTTTAATAAGTTTTTTTTCATTAACA
ATTGAGAGGAGAATAGTCGC

Downstream 100 bases:

>100_bases
GTAACGCGCGTTTTTCTTTGCTGTATTCACTAAAAGGTTTTGTATTATGACAAGCGGTCCTAACCAACCTGTTTCTTATC
CAATTTTTACCGTCCGTTGG

Product: cytochrome b559 subunit alpha

Products: NA

Alternate protein names: PSII reaction center subunit V

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MAGSTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDTFGTPRPDQYFTETRQEIPIVTDRYKAIDQINEFN
N

Sequences:

>Translated_81_residues
MAGSTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDTFGTPRPDQYFTETRQEIPIVTDRYKAIDQINEFN
N
>Mature_80_residues
AGSTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDTFGTPRPDQYFTETRQEIPIVTDRYKAIDQINEFNN

Specific function: This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbE/psbF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBE_SYNP2 (Q8RSW3)

Other databases:

- EMBL:   AY075046
- EMBL:   CP000951
- RefSeq:   YP_001733498.1
- ProteinModelPortal:   Q8RSW3
- SMR:   Q8RSW3
- GeneID:   6057589
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0230
- HOGENOM:   HBG284226
- OMA:   TPRPNEY
- ProtClustDB:   PRK02557
- GO:   GO:0009536
- GO:   GO:0006810
- HAMAP:   MF_00642
- InterPro:   IPR006217
- InterPro:   IPR006216
- InterPro:   IPR013081
- InterPro:   IPR013082
- PIRSF:   PIRSF000036
- TIGRFAMs:   TIGR01332

Pfam domain/function: PF00283 Cytochrom_B559; PF00284 Cytochrom_B559a

EC number: NA

Molecular weight: Translated: 9322; Mature: 9190

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00537 CYTOCHROME_B559

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1891e348)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDTFGTPRPDQYFTETR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
QEIPIVTDRYKAIDQINEFNN
HCCCCHHHHHHHHHHHHHCCH
>Mature Secondary Structure 
AGSTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDTFGTPRPDQYFTETR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
QEIPIVTDRYKAIDQINEFNN
HCCCCHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11914373