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The map label for this gene is rbcR [H]

Identifier: 170076803

GI number: 170076803

Start: 178297

End: 179232

Strand: Direct

Name: rbcR [H]

Synonym: SYNPCC7002_A0171

Alternate gene names: 170076803

Gene position: 178297-179232 (Clockwise)

Preceding gene: 170076801

Following gene: 170076804

Centisome position: 5.93

GC content: 52.24

Gene sequence:

>936_bases
TTGATCCCTGCAACTCTCCACCAACTGAAGGTGTTTGAAACCACGGCTCGCCACGGCAGTTTTACCAAGGCAGCGGAGGA
ATTATCAATCACCCAACCGACGGTTTCTGGACAAGTGAAACAACTGACCCAGACCATCGGGATGCCACTGTTTGAACATA
TTGGCAGAAAGCTATATCTCACGGAAGCAGGTGAGGAACTCCTCGCAACCTGCCAAGAAATCTTTGAACGGTTGGATAAC
TTTGAGATGAAGTTGGCCGCCCTGCAGGGAGCGAAACGGGGTCAACTCCGCCTTGGGGTAATCACCACAACCAAATATTT
TGTGCCGCGTATCCTGGGGGAATTTTGCCAAGATTACCCAGATATCGATGTGTCTTTGCAGGTGATCAACCACCAACAGC
TCCATGATCGGATGGCGGATAATCTAGATGATCTCTACATCCTGAGTAATTTGCCCGATGATCTTGATGTCCATGCGCAA
GCATTTTTGGACAATCCCTTGGTGGTGGTGGCCCGCGCCGATCATCCCCTGGCTCACCAGAAAAATCTCCCTCTGTCTGT
GTTGGATGGGGCCGATTTTGTGACGCGGGAAATGGGGTCGGGGACACGACTTGCGGTCGAAAAGCTCCTGGCAGAACATG
ATGTGTCGGTACAGGTGCGCCTGGAACTGGGGTCAAATGAGGCGATTAAACAGGCGATCGCCGGTGGCCTAGGGATTTCT
GTCTTGTCCCGCCATACTTTGATCACAGAGCCTCCCCACGGCGAATTAACGGTGTTGGATGTGGAGCATTTTCCGATCCA
GCGCCACTGGTATGTTGCCTACCTCGCCGGGAAACAACTGTCGGTGATTGCCCAAGCCTTTTTGGAGTTTATGGTCCGGT
CTAGCCAGAAAACTCTCGAAAATTCAGGGCGGCGATCGCTTGCTCTGCAACCCTAA

Upstream 100 bases:

>100_bases
CTTATATAGAACCGAAACTATGACGATATTTTCTTGTATTGACTCTAGTCTATGGTATTGCTAAACTCAGGCATAACAGC
ACAAGTTCAGGAGTAAACCC

Downstream 100 bases:

>100_bases
AAGCTCAAAATTGTTGGGCCATTTCCCGTGCCTTTGGTAGGTCGAAGTTGGTAATTGCCCAACCAGTAAAAAAGATGGGT
CATCAGCCCGCTTTTTCCTA

Product: RuBisCO operon transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MIPATLHQLKVFETTARHGSFTKAAEELSITQPTVSGQVKQLTQTIGMPLFEHIGRKLYLTEAGEELLATCQEIFERLDN
FEMKLAALQGAKRGQLRLGVITTTKYFVPRILGEFCQDYPDIDVSLQVINHQQLHDRMADNLDDLYILSNLPDDLDVHAQ
AFLDNPLVVVARADHPLAHQKNLPLSVLDGADFVTREMGSGTRLAVEKLLAEHDVSVQVRLELGSNEAIKQAIAGGLGIS
VLSRHTLITEPPHGELTVLDVEHFPIQRHWYVAYLAGKQLSVIAQAFLEFMVRSSQKTLENSGRRSLALQP

Sequences:

>Translated_311_residues
MIPATLHQLKVFETTARHGSFTKAAEELSITQPTVSGQVKQLTQTIGMPLFEHIGRKLYLTEAGEELLATCQEIFERLDN
FEMKLAALQGAKRGQLRLGVITTTKYFVPRILGEFCQDYPDIDVSLQVINHQQLHDRMADNLDDLYILSNLPDDLDVHAQ
AFLDNPLVVVARADHPLAHQKNLPLSVLDGADFVTREMGSGTRLAVEKLLAEHDVSVQVRLELGSNEAIKQAIAGGLGIS
VLSRHTLITEPPHGELTVLDVEHFPIQRHWYVAYLAGKQLSVIAQAFLEFMVRSSQKTLENSGRRSLALQP
>Mature_311_residues
MIPATLHQLKVFETTARHGSFTKAAEELSITQPTVSGQVKQLTQTIGMPLFEHIGRKLYLTEAGEELLATCQEIFERLDN
FEMKLAALQGAKRGQLRLGVITTTKYFVPRILGEFCQDYPDIDVSLQVINHQQLHDRMADNLDDLYILSNLPDDLDVHAQ
AFLDNPLVVVARADHPLAHQKNLPLSVLDGADFVTREMGSGTRLAVEKLLAEHDVSVQVRLELGSNEAIKQAIAGGLGIS
VLSRHTLITEPPHGELTVLDVEHFPIQRHWYVAYLAGKQLSVIAQAFLEFMVRSSQKTLENSGRRSLALQP

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=30.4195804195804, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693105, Length=238, Percent_Identity=28.9915966386555, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI157672245, Length=197, Percent_Identity=31.9796954314721, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=26.643598615917, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787879, Length=243, Percent_Identity=29.2181069958848, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082132, Length=292, Percent_Identity=27.7397260273973, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788887, Length=240, Percent_Identity=28.75, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1789173, Length=140, Percent_Identity=40, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1789204, Length=244, Percent_Identity=25.4098360655738, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790399, Length=240, Percent_Identity=25.4166666666667, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=24.4897959183673, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=24.1803278688525, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=23.5632183908046, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=183, Percent_Identity=27.8688524590164, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789639, Length=316, Percent_Identity=23.1012658227848, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=23.0452674897119, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=23.0769230769231, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34613; Mature: 34613

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPATLHQLKVFETTARHGSFTKAAEELSITQPTVSGQVKQLTQTIGMPLFEHIGRKLYL
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCEEEE
TEAGEELLATCQEIFERLDNFEMKLAALQGAKRGQLRLGVITTTKYFVPRILGEFCQDYP
ECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCC
DIDVSLQVINHQQLHDRMADNLDDLYILSNLPDDLDVHAQAFLDNPLVVVARADHPLAHQ
CCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCC
KNLPLSVLDGADFVTREMGSGTRLAVEKLLAEHDVSVQVRLELGSNEAIKQAIAGGLGIS
CCCCEEEECCCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCCHHH
VLSRHTLITEPPHGELTVLDVEHFPIQRHWYVAYLAGKQLSVIAQAFLEFMVRSSQKTLE
HHHCCCEEECCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
NSGRRSLALQP
CCCCCEECCCC
>Mature Secondary Structure
MIPATLHQLKVFETTARHGSFTKAAEELSITQPTVSGQVKQLTQTIGMPLFEHIGRKLYL
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCEEEE
TEAGEELLATCQEIFERLDNFEMKLAALQGAKRGQLRLGVITTTKYFVPRILGEFCQDYP
ECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCC
DIDVSLQVINHQQLHDRMADNLDDLYILSNLPDDLDVHAQAFLDNPLVVVARADHPLAHQ
CCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCC
KNLPLSVLDGADFVTREMGSGTRLAVEKLLAEHDVSVQVRLELGSNEAIKQAIAGGLGIS
CCCCEEEECCCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCCHHH
VLSRHTLITEPPHGELTVLDVEHFPIQRHWYVAYLAGKQLSVIAQAFLEFMVRSSQKTLE
HHHCCCEEECCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
NSGRRSLALQP
CCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA