| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is pbpG [H]
Identifier: 170076770
GI number: 170076770
Start: 136031
End: 138442
Strand: Direct
Name: pbpG [H]
Synonym: SYNPCC7002_A0138
Alternate gene names: 170076770
Gene position: 136031-138442 (Clockwise)
Preceding gene: 170076769
Following gene: 170076776
Centisome position: 4.52
GC content: 51.41
Gene sequence:
>2412_bases GTGTTTAATTTTGTCAGAAAGTCAGTGTCTCAACCCCTAGAAGACAACACCAATCAATTGCAGAGTGGGTCACAACCTGG GGCTAGCTCTGACCATGACTTACAAGGTGCTGAAAGGGTAGCCATGGACGGGGGAGAATTACCACAAACCATTACAGATA ACGGCGCATCACCCCAAAAGCCACAGCGAAAATCAAAAAGACGACGTTGGCGGCTTTGGCTATTGGCGGGACTTGTGCTT GGGGTTGGCAGCGGCAGTTTTCTCATCTACCGGGGCTGGCAGGAACTAGAGGCACTGGTGCCGGAAAATGTCGATGAAAT CTTAATTTATACACGTCCTGGCACCCTTACCATTCAAGCAGCAGATGGCAGTGTCATTGAAGAGGTGGGGCCTGTTTCCC ATGACCGGGTCAAAATCTGGGCCGTACCAACGACTTTAACCGAGGCGTTTATTGCCAGTGAAGACCGACGCTTCTATGAG CATTTTGGGGTGGATTTACAGGGGGTCGCACGGGCCGCCTACATGAACTTTCGGGCAGGCAGAGTCGTAGAAGGGGGCAG TAGCATTACGCAGCAGGTGGCGCGTATTGTCTTTTTGAACCAGGAAATGACCCTAGCGCGTAAGGTCAAGGAAATGCGCT TGGCGACGAAATTAGAAGAACAGTTCTCCAAGGAGCAGATCCTAGAAAGTTATCTAAATTTAGTTTATCTAGGCTCCGGG GCCTATGGTGTCTCGGATGCGGCTTGGGTTTATTTTGGTAAAAATTTAGAAGAACTGACCCTAGGGGAAACGGCGATGAT TGCGGGTTTAGCGCCAGCCCCCAGTTTATATTCACCGTTTGTTAATCTCCAGGCGGCGACAGTACGGCGGGATCAGGTGC TAGAGCGGATGTGGGAAGAGGGTTATATTTCCCAGACCGAGTATGAAACGGCGATCGCCACCCCCATTGAAACGAATCGG CAAACGCCCCAACGTTTACTGCGCAAATACCCCTATTTTGCTGATTATGTGAAGGCAGAACTGAAACGGTACCTTTCCCC AGAGCAGTTGGAAACGGGCAGTTTTGTCATTGAAACGACCTTAAATCCTCAATGGCAGGAGTGGTCAGAGGCGGTTGTAG CGGAAGGAATTACGAACTACGGGCGTTATCAACGCTTTGAACAGGCGGCGATGGTGAGCATCGATCCCCGCAGTGGCCAG ATTAAAACGATGGTTGGGGGTTTAGATTTTGAAAATAATCAATATAACCGCGTCACCCAAGCCCAACGGCAACCTGGTTC AACCTTCAAAATGTTTGTCTATGCAGCGGCGATTGCCTCTGGGATGTCTCCCAATGCAACCTACGTTGACCAAGAATTTG CCATTGATGGCTACCGTCCGAAGAACTATTCCGGTACCGTCAGCAATCAAGCTGTTTCCCTCACAGAAGCCCTGACAAAA TCGATCAATACCATCGCCTTGAGTGTGATGCTTGATGTGGGTTGGGACCCGATCATTAATCTCGCCCACCGCATGGGCGT TGAATCAGAGATGAAGCCCACCTATTCCCTAGCTCTGGGGGCCTGGGAAGTAAATTTACTAGAGCTAACCGCCGCCTATG GCACCCTCGCAAATGGTGGCGCTTATCAGCCTGTGTATGGCATTAGTCGAATCCTTGATCGCAATGGCAAGGTCGTTTAC CAAGCGAACCGCAAACCGATCCAAGCTATCGATTCTGATAGTGCCGCCATCATGACTTACATGCTGCGCAATGTCGTGAG TAGCGGTACCGGCAGCCAAGCGAATATTGGTCGTCCAGTGGCCGGGAAAACAGGCACCTCCGATCAGGCGCGAGACCTGT GGTTTATTGGTTACATCCCCCAAATGGTAACAGGGGTTTGGCTCGGCAATGACGATAATAAACCCACCTGGGGAGCCAGT AGTACAGCGGCGCGCCTTTGGGGTGATGCAATGCGTCAAATTGCGGCGGCCATGACGGTGGAAGATTTTCCCAAATTACC AAATTTGAATAATCGCGTCGGTTCTATTGCCGCAGAACCAATCCAAGGAGGCGCGAAAAAAACGCAGGTCGTTGCCACAG ATACAGAAGAAAAAACCAGCACCACAAATTCAGAAGCACAAGAGACCACGGAAGCATCCTCTGATGAGCGCCCAACCTCA GAGGCAGCGGCGACAACACCGACGAACAATGATAATAAAGCTGTGGTCGACAATGAAATTAAACCCCCAGCACCGGCCTT TGACTTCACTGATCCGGCGGATACTGTGCCTCCCCTTGCCCCCTTACCGAGTAATAATCGACCTGCATCCATCGCAACGC CACCGAGTCCGCCGGCGGCCCCAAGACCAGCTCCTACGAATGTTGATGTGCCGGCTCCCCCTGTTATTCAGAAGAAGGAA ACAGCTCCCTAG
Upstream 100 bases:
>100_bases CTGGAATATTCGAGCACATTTGTTAAACTGGCTCCGAATCAAAGACCGCGATGCATCATAATCTATCGCTTAATTCGAGC CATGCTTAGAGGATTTCGGC
Downstream 100 bases:
>100_bases GTATTCTGCTCGCCAAAGTAATATCCTTTTCCGTAAATGGTGTGGATTAGAGGGCGATCGCCTTTTGCTTCTACCTTGCG TCGTAGCAAGCGTACCAGAG
Product: 1A family penicillin-binding protein
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 803; Mature: 803
Protein sequence:
>803_residues MFNFVRKSVSQPLEDNTNQLQSGSQPGASSDHDLQGAERVAMDGGELPQTITDNGASPQKPQRKSKRRRWRLWLLAGLVL GVGSGSFLIYRGWQELEALVPENVDEILIYTRPGTLTIQAADGSVIEEVGPVSHDRVKIWAVPTTLTEAFIASEDRRFYE HFGVDLQGVARAAYMNFRAGRVVEGGSSITQQVARIVFLNQEMTLARKVKEMRLATKLEEQFSKEQILESYLNLVYLGSG AYGVSDAAWVYFGKNLEELTLGETAMIAGLAPAPSLYSPFVNLQAATVRRDQVLERMWEEGYISQTEYETAIATPIETNR QTPQRLLRKYPYFADYVKAELKRYLSPEQLETGSFVIETTLNPQWQEWSEAVVAEGITNYGRYQRFEQAAMVSIDPRSGQ IKTMVGGLDFENNQYNRVTQAQRQPGSTFKMFVYAAAIASGMSPNATYVDQEFAIDGYRPKNYSGTVSNQAVSLTEALTK SINTIALSVMLDVGWDPIINLAHRMGVESEMKPTYSLALGAWEVNLLELTAAYGTLANGGAYQPVYGISRILDRNGKVVY QANRKPIQAIDSDSAAIMTYMLRNVVSSGTGSQANIGRPVAGKTGTSDQARDLWFIGYIPQMVTGVWLGNDDNKPTWGAS STAARLWGDAMRQIAAAMTVEDFPKLPNLNNRVGSIAAEPIQGGAKKTQVVATDTEEKTSTTNSEAQETTEASSDERPTS EAAATTPTNNDNKAVVDNEIKPPAPAFDFTDPADTVPPLAPLPSNNRPASIATPPSPPAAPRPAPTNVDVPAPPVIQKKE TAP
Sequences:
>Translated_803_residues MFNFVRKSVSQPLEDNTNQLQSGSQPGASSDHDLQGAERVAMDGGELPQTITDNGASPQKPQRKSKRRRWRLWLLAGLVL GVGSGSFLIYRGWQELEALVPENVDEILIYTRPGTLTIQAADGSVIEEVGPVSHDRVKIWAVPTTLTEAFIASEDRRFYE HFGVDLQGVARAAYMNFRAGRVVEGGSSITQQVARIVFLNQEMTLARKVKEMRLATKLEEQFSKEQILESYLNLVYLGSG AYGVSDAAWVYFGKNLEELTLGETAMIAGLAPAPSLYSPFVNLQAATVRRDQVLERMWEEGYISQTEYETAIATPIETNR QTPQRLLRKYPYFADYVKAELKRYLSPEQLETGSFVIETTLNPQWQEWSEAVVAEGITNYGRYQRFEQAAMVSIDPRSGQ IKTMVGGLDFENNQYNRVTQAQRQPGSTFKMFVYAAAIASGMSPNATYVDQEFAIDGYRPKNYSGTVSNQAVSLTEALTK SINTIALSVMLDVGWDPIINLAHRMGVESEMKPTYSLALGAWEVNLLELTAAYGTLANGGAYQPVYGISRILDRNGKVVY QANRKPIQAIDSDSAAIMTYMLRNVVSSGTGSQANIGRPVAGKTGTSDQARDLWFIGYIPQMVTGVWLGNDDNKPTWGAS STAARLWGDAMRQIAAAMTVEDFPKLPNLNNRVGSIAAEPIQGGAKKTQVVATDTEEKTSTTNSEAQETTEASSDERPTS EAAATTPTNNDNKAVVDNEIKPPAPAFDFTDPADTVPPLAPLPSNNRPASIATPPSPPAAPRPAPTNVDVPAPPVIQKKE TAP >Mature_803_residues MFNFVRKSVSQPLEDNTNQLQSGSQPGASSDHDLQGAERVAMDGGELPQTITDNGASPQKPQRKSKRRRWRLWLLAGLVL GVGSGSFLIYRGWQELEALVPENVDEILIYTRPGTLTIQAADGSVIEEVGPVSHDRVKIWAVPTTLTEAFIASEDRRFYE HFGVDLQGVARAAYMNFRAGRVVEGGSSITQQVARIVFLNQEMTLARKVKEMRLATKLEEQFSKEQILESYLNLVYLGSG AYGVSDAAWVYFGKNLEELTLGETAMIAGLAPAPSLYSPFVNLQAATVRRDQVLERMWEEGYISQTEYETAIATPIETNR QTPQRLLRKYPYFADYVKAELKRYLSPEQLETGSFVIETTLNPQWQEWSEAVVAEGITNYGRYQRFEQAAMVSIDPRSGQ IKTMVGGLDFENNQYNRVTQAQRQPGSTFKMFVYAAAIASGMSPNATYVDQEFAIDGYRPKNYSGTVSNQAVSLTEALTK SINTIALSVMLDVGWDPIINLAHRMGVESEMKPTYSLALGAWEVNLLELTAAYGTLANGGAYQPVYGISRILDRNGKVVY QANRKPIQAIDSDSAAIMTYMLRNVVSSGTGSQANIGRPVAGKTGTSDQARDLWFIGYIPQMVTGVWLGNDDNKPTWGAS STAARLWGDAMRQIAAAMTVEDFPKLPNLNNRVGSIAAEPIQGGAKKTQVVATDTEEKTSTTNSEAQETTEASSDERPTS EAAATTPTNNDNKAVVDNEIKPPAPAFDFTDPADTVPPLAPLPSNNRPASIATPPSPPAAPRPAPTNVDVPAPPVIQKKE TAP
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=518, Percent_Identity=31.6602316602317, Blast_Score=236, Evalue=3e-63, Organism=Escherichia coli, GI87082258, Length=309, Percent_Identity=37.8640776699029, Blast_Score=202, Evalue=1e-52, Organism=Escherichia coli, GI1788867, Length=589, Percent_Identity=29.2020373514431, Blast_Score=181, Evalue=2e-46, Organism=Escherichia coli, GI1789601, Length=172, Percent_Identity=34.8837209302326, Blast_Score=87, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 87837; Mature: 87837
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNFVRKSVSQPLEDNTNQLQSGSQPGASSDHDLQGAERVAMDGGELPQTITDNGASPQK CCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCCCCCC PQRKSKRRRWRLWLLAGLVLGVGSGSFLIYRGWQELEALVPENVDEILIYTRPGTLTIQA HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCEEEEEECCCEEEEEE ADGSVIEEVGPVSHDRVKIWAVPTTLTEAFIASEDRRFYEHFGVDLQGVARAAYMNFRAG CCCCHHHHHCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC RVVEGGSSITQQVARIVFLNQEMTLARKVKEMRLATKLEEQFSKEQILESYLNLVYLGSG CEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCC AYGVSDAAWVYFGKNLEELTLGETAMIAGLAPAPSLYSPFVNLQAATVRRDQVLERMWEE CCCCCCCEEEEECCCHHHHHCCCHHHEECCCCCCHHHCCHHCCHHHHHHHHHHHHHHHHC GYISQTEYETAIATPIETNRQTPQRLLRKYPYFADYVKAELKRYLSPEQLETGSFVIETT CCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEC LNPQWQEWSEAVVAEGITNYGRYQRFEQAAMVSIDPRSGQIKTMVGGLDFENNQYNRVTQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEECCCCCCCCCHHHHHH AQRQPGSTFKMFVYAAAIASGMSPNATYVDQEFAIDGYRPKNYSGTVSNQAVSLTEALTK HHCCCCCHHHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH SINTIALSVMLDVGWDPIINLAHRMGVESEMKPTYSLALGAWEVNLLELTAAYGTLANGG HHHHHEEEEHEECCCCHHHHHHHHCCCCCCCCCCEEEEECCEEEEHEEHHHHHHCCCCCC AYQPVYGISRILDRNGKVVYQANRKPIQAIDSDSAAIMTYMLRNVVSSGTGSQANIGRPV CCCHHHHHHHHHCCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC AGKTGTSDQARDLWFIGYIPQMVTGVWLGNDDNKPTWGASSTAARLWGDAMRQIAAAMTV CCCCCCCCCCCCEEEEECHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EDFPKLPNLNNRVGSIAAEPIQGGAKKTQVVATDTEEKTSTTNSEAQETTEASSDERPTS HHCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCHHCCCCCCHHHHHHHCCCCCCCCC EAAATTPTNNDNKAVVDNEIKPPAPAFDFTDPADTVPPLAPLPSNNRPASIATPPSPPAA CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRPAPTNVDVPAPPVIQKKETAP CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFNFVRKSVSQPLEDNTNQLQSGSQPGASSDHDLQGAERVAMDGGELPQTITDNGASPQK CCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCCCCCC PQRKSKRRRWRLWLLAGLVLGVGSGSFLIYRGWQELEALVPENVDEILIYTRPGTLTIQA HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCEEEEEECCCEEEEEE ADGSVIEEVGPVSHDRVKIWAVPTTLTEAFIASEDRRFYEHFGVDLQGVARAAYMNFRAG CCCCHHHHHCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC RVVEGGSSITQQVARIVFLNQEMTLARKVKEMRLATKLEEQFSKEQILESYLNLVYLGSG CEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCC AYGVSDAAWVYFGKNLEELTLGETAMIAGLAPAPSLYSPFVNLQAATVRRDQVLERMWEE CCCCCCCEEEEECCCHHHHHCCCHHHEECCCCCCHHHCCHHCCHHHHHHHHHHHHHHHHC GYISQTEYETAIATPIETNRQTPQRLLRKYPYFADYVKAELKRYLSPEQLETGSFVIETT CCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEC LNPQWQEWSEAVVAEGITNYGRYQRFEQAAMVSIDPRSGQIKTMVGGLDFENNQYNRVTQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEECCCCCCCCCHHHHHH AQRQPGSTFKMFVYAAAIASGMSPNATYVDQEFAIDGYRPKNYSGTVSNQAVSLTEALTK HHCCCCCHHHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH SINTIALSVMLDVGWDPIINLAHRMGVESEMKPTYSLALGAWEVNLLELTAAYGTLANGG HHHHHEEEEHEECCCCHHHHHHHHCCCCCCCCCCEEEEECCEEEEHEEHHHHHHCCCCCC AYQPVYGISRILDRNGKVVYQANRKPIQAIDSDSAAIMTYMLRNVVSSGTGSQANIGRPV CCCHHHHHHHHHCCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC AGKTGTSDQARDLWFIGYIPQMVTGVWLGNDDNKPTWGASSTAARLWGDAMRQIAAAMTV CCCCCCCCCCCCEEEEECHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EDFPKLPNLNNRVGSIAAEPIQGGAKKTQVVATDTEEKTSTTNSEAQETTEASSDERPTS HHCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEECCCHHCCCCCCHHHHHHHCCCCCCCCC EAAATTPTNNDNKAVVDNEIKPPAPAFDFTDPADTVPPLAPLPSNNRPASIATPPSPPAA CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRPAPTNVDVPAPPVIQKKETAP CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]