| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170076734
Identifier: 170076734
GI number: 170076734
Start: 101724
End: 103730
Strand: Direct
Name: 170076734
Synonym: SYNPCC7002_A0101
Alternate gene names: NA
Gene position: 101724-103730 (Clockwise)
Preceding gene: 170076733
Following gene: 170076739
Centisome position: 3.38
GC content: 51.97
Gene sequence:
>2007_bases ATGGCATGGCGTCGGCGTGATTTTTTACAAGCTTTGGGGTTGACCTGTGGTGCCCTGGGGTTTTCTTCGTTTTTACGGCC ATCTGATCTCAAACAATCTGTCCAGGCTCTCAGTCAATTTCGGGGTCGCAAGATCGCGTTGCTTATTGGTATCGATCAAT ATGGTCAAGGGCCTAATTTGGGGGGGTGTCAGCAGGATCTAAAAATCCAGAAACACTTGCTGGAATCACGTTTTGGTTTT GCGGCGACGGACATCGTCACTCTCCGTAATGATCAAGCCAGTGGCAGCGGTATTTTTACAACGTTTCAAACAGACCTGAA GACACAAGTAAAGCCGGAGGATCTGGTTTTTGTGCATTTCAGCGGCTATGGTACTCGCTTAGTCACAGACCCAGCGGATC CAGAACCGATACCGGCCCTAGTGCTCCCGGGGAAATCTGGCCCTGAGGCGATCGCCCTGAGCACTTTCCAAGCCTTAATC CAAGATCTCAATCCGGCCCAGGGAATTCTCGTCTTGGATACCAGTTTTGATCCTGGGTCCCGACCCCCGGCCCCCTATTG GCGACCCCGCACCTATCCCGATGAAACGGCGATCGCCCCCGTTGTTGCCCCCGAAACCACCACTGTCAAATCAAATTCTA GTTTTGCGTTGGGGCGATCAGCTTTGATTCACCTGTGGGCTGCCACCGAGGGCATTACCCCAGAAGTGCAAATTAATGGT GTGATGACGGGACTGTTTACGGCGGCCCTTGGGCAATATCTCTCCGCCTATGACCCGATGGTCACCGTCACTACGGCCCA GACGAACCTTGCTGTGCGTTTACCCAAGGATGAGACGCAACCGGCAACAATGACCTTTTTGGGCACCAAAACCGCGCCCC TCTACGGCACCCTCCCCAGCGATACGCTGCCAGCGACGGGTCAGATTTTTAGCCAAAATCCCACGGGATTAGAAGTCTAT TTGGGGGGCTTTGAACCGGAAATTTTGCAGGCGATCGCCCCCGGTAGTGAATTAACAATTCGTACCGAAACGGCACCGAT TCTCCAACTCAGCGGCAAAGCAGGGGTTTTTGGCCAAGGGAAATCTTCTACGCCGAATGTCACCGTTGGCACAGCAATCC AAGAAACGAAACGCCATCTGCCCCGCAACCTCGCCTTAAAAATTGCCCTGGCTGAGGATCTCAGTCGCATCGAACGGGTG GATGCCACCAGTGCTTTTGCAAGTCTGACCAACATTGCCAGCGTCAGTAACCCCCAAGATTGGGTAGATTATGTTTTTGA TGAAGCCTATCAATTGACCACCGTCCCTGGCAAAATTGTCCCCGGTGTAGTGCCAGCCAGCGATACCAACGAAGCGATCA AATCTTCAGTCAATCGACTCCTCCCCCGCCTGGAACAATTATTAGCCTTAAAATGGCTCCGGTTGTTGGTCAATGAAACC AGTACCCAACTGCCTTTGAAAGTAACTGTCCAGCGTTTGGATCGTTTTTCGACCCTGCTGACGGCAAAAACAACACCCTT TAGCCTGGGGCAGTCGAAGAGCAACCCTAATCCTCAACCGACGTTTACGGTGGGAGAAAAGGGGCAATATCAATTGGAAA ATACGGGGACGCAACCTCTATTTTGTCTAGGTTTTGCCCAAAGCCCGAAACAAGAATTACTGCTCCTGACCGCCAAAGAA GGTCTCAAGATCCCCCCAGAAACCGCAACCAGTCCCCTAGAATTGACGGCGCTACGTCCCTTGGGAGTGTGGACAATTTA TTGGATCATTGGCGATCGCCCCTTTGAGAATTTCCAAGACCAGGCCACCCAACTTTTTGGGGATTTAGAGACAATTCCCC AGAGGCTAGAAAAATCCTTGCCCCTCATCCAAGGTCTCCTCAGCGATTTGCAAGCGGTTCCCCCAGAAGGCACAGAACCC AATAAAGAAAATTATGTTTTCTCCACGACCCAGTGGGCGGGTTTGCGCTTTACCTACACCGTTGTGGAAACGGAGGCGTC ATCCTAA
Upstream 100 bases:
>100_bases GTGGATGCAGATCTTGCAATACAGTGCGGTAAATAGCTCTAGCCAGGAATAGTGATGTACTGGTAGGCTGATATCAGAAT TTCAAAGGCAGTGAACTAGG
Downstream 100 bases:
>100_bases TCTTGGCGCTTGGCATAATTAAAAAAAATCAAATCAAACAATAAAAAACCCCAAGACAAAACCCTGGGGTCAAAAATTAT TGTTTTTTTAAGTTGAAGGA
Product: ICE-like protease
Products: NA
Alternate protein names: Caspase Domain Protein; ICE-Like Protease; C14 Family Peptidase; Caspase Domain-Containing Protein; Protease
Number of amino acids: Translated: 668; Mature: 667
Protein sequence:
>668_residues MAWRRRDFLQALGLTCGALGFSSFLRPSDLKQSVQALSQFRGRKIALLIGIDQYGQGPNLGGCQQDLKIQKHLLESRFGF AATDIVTLRNDQASGSGIFTTFQTDLKTQVKPEDLVFVHFSGYGTRLVTDPADPEPIPALVLPGKSGPEAIALSTFQALI QDLNPAQGILVLDTSFDPGSRPPAPYWRPRTYPDETAIAPVVAPETTTVKSNSSFALGRSALIHLWAATEGITPEVQING VMTGLFTAALGQYLSAYDPMVTVTTAQTNLAVRLPKDETQPATMTFLGTKTAPLYGTLPSDTLPATGQIFSQNPTGLEVY LGGFEPEILQAIAPGSELTIRTETAPILQLSGKAGVFGQGKSSTPNVTVGTAIQETKRHLPRNLALKIALAEDLSRIERV DATSAFASLTNIASVSNPQDWVDYVFDEAYQLTTVPGKIVPGVVPASDTNEAIKSSVNRLLPRLEQLLALKWLRLLVNET STQLPLKVTVQRLDRFSTLLTAKTTPFSLGQSKSNPNPQPTFTVGEKGQYQLENTGTQPLFCLGFAQSPKQELLLLTAKE GLKIPPETATSPLELTALRPLGVWTIYWIIGDRPFENFQDQATQLFGDLETIPQRLEKSLPLIQGLLSDLQAVPPEGTEP NKENYVFSTTQWAGLRFTYTVVETEASS
Sequences:
>Translated_668_residues MAWRRRDFLQALGLTCGALGFSSFLRPSDLKQSVQALSQFRGRKIALLIGIDQYGQGPNLGGCQQDLKIQKHLLESRFGF AATDIVTLRNDQASGSGIFTTFQTDLKTQVKPEDLVFVHFSGYGTRLVTDPADPEPIPALVLPGKSGPEAIALSTFQALI QDLNPAQGILVLDTSFDPGSRPPAPYWRPRTYPDETAIAPVVAPETTTVKSNSSFALGRSALIHLWAATEGITPEVQING VMTGLFTAALGQYLSAYDPMVTVTTAQTNLAVRLPKDETQPATMTFLGTKTAPLYGTLPSDTLPATGQIFSQNPTGLEVY LGGFEPEILQAIAPGSELTIRTETAPILQLSGKAGVFGQGKSSTPNVTVGTAIQETKRHLPRNLALKIALAEDLSRIERV DATSAFASLTNIASVSNPQDWVDYVFDEAYQLTTVPGKIVPGVVPASDTNEAIKSSVNRLLPRLEQLLALKWLRLLVNET STQLPLKVTVQRLDRFSTLLTAKTTPFSLGQSKSNPNPQPTFTVGEKGQYQLENTGTQPLFCLGFAQSPKQELLLLTAKE GLKIPPETATSPLELTALRPLGVWTIYWIIGDRPFENFQDQATQLFGDLETIPQRLEKSLPLIQGLLSDLQAVPPEGTEP NKENYVFSTTQWAGLRFTYTVVETEASS >Mature_667_residues AWRRRDFLQALGLTCGALGFSSFLRPSDLKQSVQALSQFRGRKIALLIGIDQYGQGPNLGGCQQDLKIQKHLLESRFGFA ATDIVTLRNDQASGSGIFTTFQTDLKTQVKPEDLVFVHFSGYGTRLVTDPADPEPIPALVLPGKSGPEAIALSTFQALIQ DLNPAQGILVLDTSFDPGSRPPAPYWRPRTYPDETAIAPVVAPETTTVKSNSSFALGRSALIHLWAATEGITPEVQINGV MTGLFTAALGQYLSAYDPMVTVTTAQTNLAVRLPKDETQPATMTFLGTKTAPLYGTLPSDTLPATGQIFSQNPTGLEVYL GGFEPEILQAIAPGSELTIRTETAPILQLSGKAGVFGQGKSSTPNVTVGTAIQETKRHLPRNLALKIALAEDLSRIERVD ATSAFASLTNIASVSNPQDWVDYVFDEAYQLTTVPGKIVPGVVPASDTNEAIKSSVNRLLPRLEQLLALKWLRLLVNETS TQLPLKVTVQRLDRFSTLLTAKTTPFSLGQSKSNPNPQPTFTVGEKGQYQLENTGTQPLFCLGFAQSPKQELLLLTAKEG LKIPPETATSPLELTALRPLGVWTIYWIIGDRPFENFQDQATQLFGDLETIPQRLEKSLPLIQGLLSDLQAVPPEGTEPN KENYVFSTTQWAGLRFTYTVVETEASS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72511; Mature: 72380
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWRRRDFLQALGLTCGALGFSSFLRPSDLKQSVQALSQFRGRKIALLIGIDQYGQGPNL CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEHHCCCCCCC GGCQQDLKIQKHLLESRFGFAATDIVTLRNDQASGSGIFTTFQTDLKTQVKPEDLVFVHF CCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEE SGYGTRLVTDPADPEPIPALVLPGKSGPEAIALSTFQALIQDLNPAQGILVLDTSFDPGS CCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC RPPAPYWRPRTYPDETAIAPVVAPETTTVKSNSSFALGRSALIHLWAATEGITPEVQING CCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCEECCHHEEEEEECCCCCCCCEEECH VMTGLFTAALGQYLSAYDPMVTVTTAQTNLAVRLPKDETQPATMTFLGTKTAPLYGTLPS HHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCEEECCCC DTLPATGQIFSQNPTGLEVYLGGFEPEILQAIAPGSELTIRTETAPILQLSGKAGVFGQG CCCCCCCEEECCCCCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCC KSSTPNVTVGTAIQETKRHLPRNLALKIALAEDLSRIERVDATSAFASLTNIASVSNPQD CCCCCCEEECHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH WVDYVFDEAYQLTTVPGKIVPGVVPASDTNEAIKSSVNRLLPRLEQLLALKWLRLLVNET HHHHHHHCCEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC STQLPLKVTVQRLDRFSTLLTAKTTPFSLGQSKSNPNPQPTFTVGEKGQYQLENTGTQPL CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCE FCLGFAQSPKQELLLLTAKEGLKIPPETATSPLELTALRPLGVWTIYWIIGDRPFENFQD EEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHHHH QATQLFGDLETIPQRLEKSLPLIQGLLSDLQAVPPEGTEPNKENYVFSTTQWAGLRFTYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEE VVETEASS EEEECCCC >Mature Secondary Structure AWRRRDFLQALGLTCGALGFSSFLRPSDLKQSVQALSQFRGRKIALLIGIDQYGQGPNL CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEHHCCCCCCC GGCQQDLKIQKHLLESRFGFAATDIVTLRNDQASGSGIFTTFQTDLKTQVKPEDLVFVHF CCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEE SGYGTRLVTDPADPEPIPALVLPGKSGPEAIALSTFQALIQDLNPAQGILVLDTSFDPGS CCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC RPPAPYWRPRTYPDETAIAPVVAPETTTVKSNSSFALGRSALIHLWAATEGITPEVQING CCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCEECCHHEEEEEECCCCCCCCEEECH VMTGLFTAALGQYLSAYDPMVTVTTAQTNLAVRLPKDETQPATMTFLGTKTAPLYGTLPS HHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCEEECCCC DTLPATGQIFSQNPTGLEVYLGGFEPEILQAIAPGSELTIRTETAPILQLSGKAGVFGQG CCCCCCCEEECCCCCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCC KSSTPNVTVGTAIQETKRHLPRNLALKIALAEDLSRIERVDATSAFASLTNIASVSNPQD CCCCCCEEECHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH WVDYVFDEAYQLTTVPGKIVPGVVPASDTNEAIKSSVNRLLPRLEQLLALKWLRLLVNET HHHHHHHCCEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC STQLPLKVTVQRLDRFSTLLTAKTTPFSLGQSKSNPNPQPTFTVGEKGQYQLENTGTQPL CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCE FCLGFAQSPKQELLLLTAKEGLKIPPETATSPLELTALRPLGVWTIYWIIGDRPFENFQD EEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHHHH QATQLFGDLETIPQRLEKSLPLIQGLLSDLQAVPPEGTEPNKENYVFSTTQWAGLRFTYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEE VVETEASS EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA