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The map label for this gene is rbfA

Identifier: 170076709

GI number: 170076709

Start: 79979

End: 80374

Strand: Direct

Name: rbfA

Synonym: SYNPCC7002_A0074

Alternate gene names: 170076709

Gene position: 79979-80374 (Clockwise)

Preceding gene: 170076702

Following gene: 170076710

Centisome position: 2.66

GC content: 50.76

Gene sequence:

>396_bases
ATGGCAAATAGTCGACGGGTATCGAAGGTTTCTTCGCTAATCAAGCGGGAAGTGAGTTTGATGCTCATGCAAGATATTAA
AGATGACCGAGTTGGGGCGGGCATGGTGAGCATTACTGAAGTGGAAGTGTCTGGGGACTTGCAGCACGCCAAGATTTTTG
TGAGCATCTACGGTTCCGAGGAAGCCCGGGCCGAAACGATGGAAGGACTGCGGGCCAGCCAAGGATTTGTGCGTCGTACC
CTAGGTCAACGGATTCGCCTGCGGCGATCGCCAGAGGTTTTATTCATTGAAGACCGTTCCCTTGAAGAGGGAGACCGGAT
GATCCATCTCATTAACCAACTAGAAATTAAGGATCCAGAGGAACTAGAAGCCCAAGAATCCGAGGAAATGGTGTAG

Upstream 100 bases:

>100_bases
GCTTTTTGAATCAATGGAAGACTCAAGGAAATGGCTAAGGAGCGGCTGGGGTTGTAAGTGCCTGGAACGCGGTACAGGAT
TTTAGGAGGCGAATAAAGTC

Downstream 100 bases:

>100_bases
CGCCCTTGGTGATGGCTCCCCTCCCCCCGGTTGAATCCTTGTCTCTCCGCCAGGCGATCGCCCAGATGATCGTTGTGCGG
GGGGCAGGCTATCTATTTGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MANSRRVSKVSSLIKREVSLMLMQDIKDDRVGAGMVSITEVEVSGDLQHAKIFVSIYGSEEARAETMEGLRASQGFVRRT
LGQRIRLRRSPEVLFIEDRSLEEGDRMIHLINQLEIKDPEELEAQESEEMV

Sequences:

>Translated_131_residues
MANSRRVSKVSSLIKREVSLMLMQDIKDDRVGAGMVSITEVEVSGDLQHAKIFVSIYGSEEARAETMEGLRASQGFVRRT
LGQRIRLRRSPEVLFIEDRSLEEGDRMIHLINQLEIKDPEELEAQESEEMV
>Mature_130_residues
ANSRRVSKVSSLIKREVSLMLMQDIKDDRVGAGMVSITEVEVSGDLQHAKIFVSIYGSEEARAETMEGLRASQGFVRRTL
GQRIRLRRSPEVLFIEDRSLEEGDRMIHLINQLEIKDPEELEAQESEEMV

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=117, Percent_Identity=36.7521367521368, Blast_Score=76, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SYNP2 (B1XLD1)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001733347.1
- ProteinModelPortal:   B1XLD1
- GeneID:   6056736
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0074
- HOGENOM:   HBG751055
- OMA:   QMRRAPE
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14933; Mature: 14802

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSRRVSKVSSLIKREVSLMLMQDIKDDRVGAGMVSITEVEVSGDLQHAKIFVSIYGSE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCC
EARAETMEGLRASQGFVRRTLGQRIRLRRSPEVLFIEDRSLEEGDRMIHLINQLEIKDPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCH
ELEAQESEEMV
HHHCCHHCCCC
>Mature Secondary Structure 
ANSRRVSKVSSLIKREVSLMLMQDIKDDRVGAGMVSITEVEVSGDLQHAKIFVSIYGSE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCC
EARAETMEGLRASQGFVRRTLGQRIRLRRSPEVLFIEDRSLEEGDRMIHLINQLEIKDPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCH
ELEAQESEEMV
HHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA