Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 170076710

GI number: 170076710

Start: 80380

End: 81978

Strand: Direct

Name: ybbD [H]

Synonym: SYNPCC7002_A0075

Alternate gene names: 170076710

Gene position: 80380-81978 (Clockwise)

Preceding gene: 170076709

Following gene: 170076711

Centisome position: 2.67

GC content: 53.6

Gene sequence:

>1599_bases
TTGGTGATGGCTCCCCTCCCCCCGGTTGAATCCTTGTCTCTCCGCCAGGCGATCGCCCAGATGATCGTTGTGCGGGGGGC
AGGCTATCTATTTGACTACGAACGCCCCTACCCCCAGTGGGAAGCTGATCAAACGACCCTACAACGCTGGATCGAGGCGG
GGATCGGTGGCGTAATTCTTCTGGGTGGGAGTGCCGCCGAGGTAGCCCAGAAAACCAAGCAATTGCAGAGTTGGGCCGAA
ATTCCCCTCCTGATTGCCGCAGATATCGAAGAAGGGGTCGGCCAACGGTTTCGCGGTGCGACGGAATTCCCGCCTCCCAT
GGCTTTCGGTGAGATTTGGCGCACAGATCCCCACCAGGCGATCGCCCTTGCAGAAACCATGGGTGCAACTACGGCCCAGG
AAGCCCTCAGCCTTGGCATCAATTGGGTTTTGGCCCCGGTGCTGGATGTGAATAACAATCCCCACAACCCGGTGATCAAC
ATCCGTGCCTTCGGGGAAACGCCGGATCAGGTGAGTGCCTTGGGTACTGCGTTTATCCGGGGGGCGCAACAATATGCTGT
TTTAACGACAGCGAAACATTTTCCGGGCCATGGGGACACGGCAACTGATTCCCACCTCGCGCTCCCCACCATTTCCCACG
ATGACACGCGCTTAAATACCGTCGAACTGCCTCCCTTCAAGGCCGCTATCCAAGGGGGCGTAGATGCGGTGATGAATGCC
CACCTCATGATCCCCGCTTGGGATCAACAATATCCAGCAACCCTTTCGCCAGCAATTCTTACGGGCCAACTGCGGCACAA
GCTGGGGTTTAAAGGGTTAATTGTCACCGATGCGTTGGTCATGGGAGGAATTACCCAGTTTGCGGCTCCTGATACCGTTG
TTGTCCAGGCGATCGCCGCTGGGGCGGATATTCTCCTGATGCCTCCCGATGTGGACGGAGCGATTATTGCCATCGAAACG
GCGATCAAAACAGGTCAACTTTCAGAAAGTCGCATCTATGAATCCGTAGAACGAATTTGGCAGGCCAAGCAAAAAATCCT
TACGGCAACACCATCAACTTTTCCCCAGGGGATCAGCGGGGATCGCCCGGAAACGAGAAAAACCGTTGCCATGGTGCTGG
AAAGAGCGACTAAACATCAAAAATCCCTCGTAAAAATATCAAGTTTTCCTGACAATTTTGCGCGCAACTTAATTGTGGTG
GATTCAGTTTTAAAAAGCCCTTTTTTGCGTCCCAATTGTCCGGCGATCGCCATTCCCCAACGCCACGGTTATGCCGCTGA
AATTGTCGAATTAAAAACGCTCCCTCGCCTGCAGTTAGAAGCGATCCCTACCCTTATCCAGTGTTTTCTTCGGGGTAATC
CCTTTACAGAAAAACTGGCAGATCCCATCGATGTTCTCCAAAAAATTGCCGCCCAAATACCGTTACAGGGCGTTATCTTT
TACGGTAGTCCCTACTTCCTCGAAGCTTTACAAACGACTTTGCCAGAAATTCCCTGGTGGTTTAGCTATGGTCAAATGGC
GATCGCCCAAGCCGAAATCTGTACATCCCTCTGGGAAGAAGCGCCCCAAGCGGCTCCCAGCGCCGCCGAATTCATTTAA

Upstream 100 bases:

>100_bases
TTGAAGAGGGAGACCGGATGATCCATCTCATTAACCAACTAGAAATTAAGGATCCAGAGGAACTAGAAGCCCAAGAATCC
GAGGAAATGGTGTAGCGCCC

Downstream 100 bases:

>100_bases
AAAGTTCGTCGGACGTTGGACAACGGATAATCAAACCTTAATGATCTTTGATTACATTACTTAAAGTTTCGCTAAAAACG
TTATTGATAAGTATTGAAAT

Product: glycosy hydrolase family protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MVMAPLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAE
IPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVIN
IRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNA
HLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIET
AIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVV
DSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIF
YGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI

Sequences:

>Translated_532_residues
MVMAPLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAE
IPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVIN
IRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNA
HLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIET
AIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVV
DSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIF
YGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI
>Mature_532_residues
MVMAPLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAE
IPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVIN
IRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNA
HLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIET
AIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVV
DSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIF
YGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=271, Percent_Identity=29.8892988929889, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788453, Length=279, Percent_Identity=26.5232974910394, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.21

Molecular weight: Translated: 57772; Mature: 57772

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMAPLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVIL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCEEEE
LGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQA
ECCCHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHH
IALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIR
HHHHHHHCCHHHHHHHHHCCHHEEEEHEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
GAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNA
CCHHHEEEEEHHCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCCHHHHHHCCHHHHHCC
HLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAA
EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHC
GADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISG
CCCEEEECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQ
CCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHCCCHHHHHHHHCCCCCCCCCEEECCC
RHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIF
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCEEEE
YGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI
ECCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
>Mature Secondary Structure
MVMAPLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVIL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCEEEE
LGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQA
ECCCHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHH
IALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIR
HHHHHHHCCHHHHHHHHHCCHHEEEEHEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
GAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNA
CCHHHEEEEEHHCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCCHHHHHHCCHHHHHCC
HLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAA
EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHC
GADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISG
CCCEEEECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQ
CCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHCCCHHHHHHHHCCCCCCCCCEEECCC
RHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIF
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCEEEE
YGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI
ECCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]