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The map label for this gene is sodC1 [H]

Identifier: 170025660

GI number: 170025660

Start: 3778490

End: 3779095

Strand: Reverse

Name: sodC1 [H]

Synonym: YPK_3445

Alternate gene names: 170025660

Gene position: 3779095-3778490 (Counterclockwise)

Preceding gene: 170025661

Following gene: 170025659

Centisome position: 80.59

GC content: 50.0

Gene sequence:

>606_bases
ATGAAATTAATTACATTATTGCTACCTGTTATTCTTTACTCCAGCGCAACACTGGCCGCTAACATGGCTGGCATGAATGA
TAAGGCTGGCATGAATGATAAGGCTGGCATGAATGATAAGGCCAGTATGAATGATATGGCTAGCATGACTGTGAAAATCA
ACGAATCATTGCCACAAGGTAATGGGAAAGCGCTTGGCACCGTGACGGTGACTGAAACCGCTTATGGCTTACTGTTTACG
CCACATCTCACTGGGCTGGCTCCGGGAATTCACGGTTTCCATCTGCATGAAAAACCCAGTTGTGCTCCGGGGATGAAAGA
TGGCAAGGCAGTGCCAGCATTGGCAGCCGGGGGGCATCTTGACCCAAATAAGACCGGGGTACACCTTGGTCCTTACAACG
ATAAAGGGCATCTGGGGGATCTGCCGGGATTGGTGGTTAATGCAGATGGCACCGCCACCTATCCCGTATTGGCTCCGCGC
CTGAAATCGTTGTCAGAGGTGAAACAGCATGCGTTAATGATCCATGCTGGCGGTGATAATTACTCTGATCATCCAATGCC
TTTAGGCGGTGGTGGCGCACGGATGGCATGTGGAGTCATTGAGTAA

Upstream 100 bases:

>100_bases
TGTGTGCGGGAGTATGAAGCATAAGTAATAATTAATCGTCAAAAGTTTCCTATTGACAAGGTTAAACCAGACTTAATCAA
CATATAAGGGATATAACAAT

Downstream 100 bases:

>100_bases
CCGTCTGATACAGTTAAACTGGCTACCCGAGCGTAGCCAGTTTGGTGGAGGCCGGGTAATCTGCGATAATCGGTCACTGA
TTTGAATAACGATAGAGATA

Product: superoxide dismutase

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKLITLLLPVILYSSATLAANMAGMNDKAGMNDKAGMNDKASMNDMASMTVKINESLPQGNGKALGTVTVTETAYGLLFT
PHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPR
LKSLSEVKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE

Sequences:

>Translated_201_residues
MKLITLLLPVILYSSATLAANMAGMNDKAGMNDKAGMNDKASMNDMASMTVKINESLPQGNGKALGTVTVTETAYGLLFT
PHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPR
LKSLSEVKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE
>Mature_201_residues
MKLITLLLPVILYSSATLAANMAGMNDKAGMNDKAGMNDKASMNDMASMTVKINESLPQGNGKALGTVTVTETAYGLLFT
PHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHLDPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPR
LKSLSEVKQHALMIHAGGDNYSDHPMPLGGGGARMACGVIE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=155, Percent_Identity=61.9354838709677, Blast_Score=187, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20699; Mature: 20699

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLITLLLPVILYSSATLAANMAGMNDKAGMNDKAGMNDKASMNDMASMTVKINESLPQG
CHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
NGKALGTVTVTETAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHL
CCCEEEEEEECCCCCEEEECCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCC
DPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDN
CCCCCEEEECCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHEEEEEECCCC
YSDHPMPLGGGGARMACGVIE
CCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MKLITLLLPVILYSSATLAANMAGMNDKAGMNDKAGMNDKASMNDMASMTVKINESLPQG
CHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
NGKALGTVTVTETAYGLLFTPHLTGLAPGIHGFHLHEKPSCAPGMKDGKAVPALAAGGHL
CCCEEEEEEECCCCCEEEECCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCC
DPNKTGVHLGPYNDKGHLGDLPGLVVNADGTATYPVLAPRLKSLSEVKQHALMIHAGGDN
CCCCCEEEECCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHEEEEEECCCC
YSDHPMPLGGGGARMACGVIE
CCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]