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The map label for this gene is ygcF [H]

Identifier: 170025659

GI number: 170025659

Start: 3777715

End: 3778386

Strand: Reverse

Name: ygcF [H]

Synonym: YPK_3444

Alternate gene names: 170025659

Gene position: 3778386-3777715 (Counterclockwise)

Preceding gene: 170025660

Following gene: 170025657

Centisome position: 80.57

GC content: 48.96

Gene sequence:

>672_bases
ATGCTGTACCCGATTAATGAAATGTTCCAGACGTTGCAGGGCGAGGGTTATTTCACTGGCGTTCCAGCGATTTTTGTTCG
CTTGCAAGGTTGCCCGGTAGGTTGTAGCTGGTGTGACACCAAACATACCTGGGAAAAAGAAGCAGATCGGGAAGTCGATA
TGCAGCGCATTATGGTGAAAACCGCAGAAAGTGATGCCTGGGGTTCAGCCAGTGAACAGCAACTGTTAGATCTTTTCGCT
CAGCAAGGGTATACCGCCCGCCATGTGGTTATCACGGGTGGTGAGCCATCCATTTACGATCTCCAGCCCTTAACGTCACT
GTTGGAGCAAGCTGGCTTCAGTTGCCAGATTGAAACCAGTGGTACTCATGAAGTGCGGTGTTCTGCCCAGACTTGGGTGA
CCGTTTCACCAAAAGTGAATATGCGCGGTGGCCTAAAAATATTGTCACAGGCACTCCAGCGTGCGGATGAAATTAAGCAT
CCGGTTGGCCGGTTACGAGATATCGAAGCATTAGAAGCGTTACTGGCGACGTTGGATGATGATAAAAAACGGATTATTGC
ACTGCAGCCGATAAGCCAGAAAGAGGATGCGACCAAGTTGTGTATTGAGACCTGCATCGCTAAGAACTGGCGGTTGTCGA
TGCAGACACATAAATATCTCAATATCGCTTGA

Upstream 100 bases:

>100_bases
TCTGATACAGTTAAACTGGCTACCCGAGCGTAGCCAGTTTGGTGGAGGCCGGGTAATCTGCGATAATCGGTCACTGATTT
GAATAACGATAGAGATACTG

Downstream 100 bases:

>100_bases
TACCCTTCGTCCTTGACGCTGTCGCGGTTTTAGCTGGATGGACGGTTAGCTGCGCTCACTCGCCCGAATCACTTACCGGT
CGTTGACCCTAAAATAAATA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTAESDAWGSASEQQLLDLFA
QQGYTARHVVITGGEPSIYDLQPLTSLLEQAGFSCQIETSGTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKH
PVGRLRDIEALEALLATLDDDKKRIIALQPISQKEDATKLCIETCIAKNWRLSMQTHKYLNIA

Sequences:

>Translated_223_residues
MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTAESDAWGSASEQQLLDLFA
QQGYTARHVVITGGEPSIYDLQPLTSLLEQAGFSCQIETSGTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKH
PVGRLRDIEALEALLATLDDDKKRIIALQPISQKEDATKLCIETCIAKNWRLSMQTHKYLNIA
>Mature_223_residues
MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVKTAESDAWGSASEQQLLDLFA
QQGYTARHVVITGGEPSIYDLQPLTSLLEQAGFSCQIETSGTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKH
PVGRLRDIEALEALLATLDDDKKRIIALQPISQKEDATKLCIETCIAKNWRLSMQTHKYLNIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=223, Percent_Identity=79.372197309417, Blast_Score=384, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25015; Mature: 25015

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TAESDAWGSASEQQLLDLFAQQGYTARHVVITGGEPSIYDLQPLTSLLEQAGFSCQIETS
HCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCEEEEECC
GTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKHPVGRLRDIEALEALLATLDD
CCCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKKRIIALQPISQKEDATKLCIETCIAKNWRLSMQTHKYLNIA
CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECC
>Mature Secondary Structure
MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TAESDAWGSASEQQLLDLFAQQGYTARHVVITGGEPSIYDLQPLTSLLEQAGFSCQIETS
HCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCEEEEECC
GTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKHPVGRLRDIEALEALLATLDD
CCCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKKRIIALQPISQKEDATKLCIETCIAKNWRLSMQTHKYLNIA
CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]