| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is iolC [H]
Identifier: 170025262
GI number: 170025262
Start: 3341189
End: 3343159
Strand: Reverse
Name: iolC [H]
Synonym: YPK_3041
Alternate gene names: 170025262
Gene position: 3343159-3341189 (Counterclockwise)
Preceding gene: 170025263
Following gene: 170025261
Centisome position: 71.29
GC content: 55.5
Gene sequence:
>1971_bases ATGAGTGTGGAAAAGCAATTTAGCGTTAGCGCGGAAAAGACATGTAATACGGAAAATAAATGTAATACGGAAAAAAAATT TGATGTCATATGCATGGGCCGCATTGCGGTAGATCTCTACGGTCAGCAGATTGGCGCACGGCTAGAGGATGTTGCCAGCT TTGCCAAATATCTCGGCGGTTCATCCGGCAACGTGGCTTATGGTTCCGCCCGGCAGGGGCTGCGCTCGTCAATGTTGGCA CGGGTGGGCGACGAGCATATGGGGCGTTTTCTGCGTGAAGAGCTTCATCAGGTTGGCTGTGATACCAGCCATCTGACCAC AGATAAAAAGCGGCTCACGGCGCTGGTACTCCTGAGTATTAAAGATCGAGACACCTTTCCGCTGATTTTCTACCGCGATA ACTGTGCCGATATGGCGATTACGGCGCAGGATTTCAGCGAGCAATACATCGCCTCTGCCCGCTGCCTTGCCATCACGGGC ACCCATCTTTCTCATCCAAACACTCGTGAAGCGGTACTGACAGCGCTGCGCTATGCACGCCGCAATGGAGTGCGTACCGT GTTGGATATTGACTACCGCCCGGTACTGTGGGGGCTGACGTCGCTTGGTGACGGCGAAACGCGCTTTATTGAATCCCATC AGGTCACTGCTGAACTGCTCGCAGTATTCAATTTGTTTGATGTGATTGTGGGGACCGAAGAGGAATTTCATATTGCGGGT GGTAGCACCAATACGCTGGATGCACTGAGAGGTGTGCGTGAGGTCAGTGACGCTACGCTGGTGTGCAAGCGGGGGGCGCT GGGTTGTTCGGTGTACACCGAGGCCATCCCGCAGACCCTTGATGAGGGGTTGACCGTTAGCGGTGTTCGGGTAAAAGTGC TGAACGTGTTGGGCGCAGGGGACGCATTTATGTCAGGTCTCCTGCGCGGTTATCTCAATGATGAAGGTTGGCCGCAGGCA TGTCGCTATGCTAATGCTTGTGGTGCACTGGTGGTCTCGCGCCACGGCTGTGCGCCCGCGATGCCGAGTAAAATTGAGCT GGATAATTATCTGGCGCGGGCAGATGCCGTGGTGCGGCCAGATCTTGATGTGCATCTTAACCATTTACACCGCGTTACGA CGCGCCGCCGCCAGTGGCCCGAGCTGTGCGTGATGGCCTTTGATCACCGCAGTCAACTCGAAGAAATGGCACTGCAATGC GGCGCTGATCTGTGCCATATCTCGACGCTCAAGACACTAATTTTACAGGCCAGCCGTGAGGCAGTACACACTGCCGGGCT GCAGGGGAAAGCGGGGCTGCTGTGCGATGGCACTTTTGGTCAGGACGCCCTTAATGCCATTACGGGAGCAGGCTGGTGGA TTGGGCGGCCCATTGAACTGCCTGGCTCAAGGCCGCTGGCGATGGAGCACGGCAATATTGGCTCACAACTTATTGGTTGG CCGCAAGAGCATATCGTCAAGTGTCTGGTGTTCTTCCATCCAGAAGATGCCTACAGCCTACGCCTGGAGCAGGAACAGAA AATTATTGAGGTGTACCGGGCGTGTTGCCAATCTGGCCACGAACTGCTGCTGGAAGTGATATTACCCGCTGGCATGCCAC GCAGTGATGAACTCTACCTACGTGCTATTTCACGCTTCTACAATCTCGGGGTCTATCCCGATTGGTGGAAACTGCCGCCA CTCGCCTCAGAGGGCTGGGCGGCGCTGAACAAACTGATTGAACGGCGCGATCCGCACTGCCGCGGCGTAGTGATCCTTGG GCTCGATGCCTCACTTGAGGCACTGCGCACAGGCTTTAATGCCGCGGCGGGCTACCCGATAGTCAAAGGTTTTGCCGTAG GGCGCACGCTGTTTGGTGACGCTTCCCTCGCTTGGCTAAAGCGCGATATTGACGATACGCAGCTTATTGCCCGCATTCGG GACAACTATCTACAGCTCATTACGCTGTGGCGTGAGCGCGGGCAGAAATAA
Upstream 100 bases:
>100_bases TGCTCTGTCTCATCAGGATAGCCGCTGGGTGAATGTGACCGACATTGTCTGAGGATGGGGTATGTCTGAGGATGAGGTAT GACAGGGTCTGAGGGGGGGT
Downstream 100 bases:
>100_bases TCTTCAGGAGAAATATGACGATGGTGGATCAAAGAACGGCGGTTGAACCAAAAACGGCGGTTGATCAGACAACAGAGGTT ATTCGAAAAGTAGAAGTTGC
Product: ribokinase-like domain-containing protein
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase; DKG kinase [H]
Number of amino acids: Translated: 656; Mature: 655
Protein sequence:
>656_residues MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLA RVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITG THLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAG GSTNTLDALRGVREVSDATLVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQA CRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQC GADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGW PQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPP LASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIR DNYLQLITLWRERGQK
Sequences:
>Translated_656_residues MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLA RVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITG THLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAG GSTNTLDALRGVREVSDATLVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQA CRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQC GADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGW PQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPP LASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIR DNYLQLITLWRERGQK >Mature_655_residues SVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLAR VGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGT HLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGG STNTLDALRGVREVSDATLVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQAC RYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCG ADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWP QEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPL ASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRD NYLQLITLWRERGQK
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Escherichia coli, GI1790193, Length=301, Percent_Identity=24.2524916943522, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 72572; Mature: 72441
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGG CCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC SSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSI CCCCEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHCCCHHHHEEEEEEEEE KDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYAR CCCCCCEEEEEECCCCCEEEEHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHH RNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAG HCCCEEEEECCCCHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC GSTNTLDALRGVREVSDATLVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAG CCCCHHHHHHHHHHHHCHHEEECCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEHHHCCC DAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHCCEECC DLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASRE CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGW HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCHHCCC PQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYL CHHHHHHHHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH RAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFN HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCC AAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK CCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGG CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC SSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSI CCCCEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHCCCHHHHEEEEEEEEE KDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYAR CCCCCCEEEEEECCCCCEEEEHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHH RNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAG HCCCEEEEECCCCHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC GSTNTLDALRGVREVSDATLVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAG CCCCHHHHHHHHHHHHCHHEEECCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEHHHCCC DAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHCCEECC DLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASRE CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGW HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCHHCCC PQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYL CHHHHHHHHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH RAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFN HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCC AAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK CCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA