| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is chb [H]
Identifier: 170025214
GI number: 170025214
Start: 3286235
End: 3288910
Strand: Reverse
Name: chb [H]
Synonym: YPK_2992
Alternate gene names: 170025214
Gene position: 3288910-3286235 (Counterclockwise)
Preceding gene: 170025215
Following gene: 170025206
Centisome position: 70.13
GC content: 50.07
Gene sequence:
>2676_bases ATGAACAAATTTAAGTTAAATGCGTTGGCGGCCATCACAGCTACCTTTGGTTTGATTGGCTACGCGAACGGTAGCGCCAC CAATCAACAAGTTGTTGACCAACTCAGTACCTTGAAAGTTAACTATAAATTATTGGATAACCGTGCTGCTGATAATGGCG TTGATTGCGCCAAATTGGGTGCTGATTGGGCATCTTGTAATAAGGTCATGATAACGCTGACCAACACCGGGGATGAGATC AAAGGCCAGGACTGGGCGATTTATTTTCACAGTATTCGTATGATTTTGGCTGTGGATAACGATCAGTTTACGGTGACTCA CCTGACGGGGGATCTGCACAAAATTGAACCAACCGCTAAGTTTGCTGGTTTCCCCGCCAATCAGACAATTGAAATCCCAA TTACGGGGGAATACTGGCAATTATTTGCCACTGACTTTATGCCGCGTTGGTATGCAACCTCGGGCGATGCCAAGCCAAAA GTTTTGGCCAGTACTGATACGGAAGACATTAACGCATACCTGACACCGTTTACCGGTGACCAGTGGAAGCGTACCAAAGA CGATAATAATGTGCTGATGACGCCAGAATCACGTTTCGTCAAAAACGAGGCAGTGAAAACACTCTCTGCGGCTAACCTGC GTGGGCAGATTATCCCAACACCACTGGACGTTAAGGTTTATCCGCAAGATGCCGATCTGAGCCTCGGTGTGGCGCTGGAA TTGAGTGCGCTACCCAAACCGGCCTCTGATGCCATACAGCAACGTTTTGAATTGCTGGGCCTGGCGCTAAGCGCGACGGG CTATCCGATTAAAACAGTGATTCAGCCAACGGCCTTCAACGGGGATCACGCTGTTTCCGGTGCGTATGAACTGAAAATTG GTGAGAAGGGCGCAGAGGTGATTGGTTTTGATCAGGTCGGTGTATTCTATGGCCTGCAATCTATCCTTTCCTTGGTACCT ATTGAGGGGAGCAAAACAATAGCCACCCTTGATGCGAAAGATGCGCCACGCTTTGACTACCGTGGTGTCTCGCTCGATGT GGGGCGTAACTTCAAAACCAAAGCGGCGGTCCTACGTTTATTGGATCAAATGTCTGCTTACAAACTGAATAAATTCCACT TCCATCTGAGTGATGATGAAGGCTGGCGCATTGAGATCCCTGGCCTGCCTGAATTGACCGATGTCGGCAGCCAGCGTTGC CATGATTTGACTGAAACCACCTGTTTGCTACCACAGCTAGGCTCTGGCCCTGAGAGCAATAATCTGGGGAGCGGTTATTT CACTCGCGCTGATTACATCGATATTCTGAAATATGCCAAAGCGCGCCAGATTGATGTCATTCCTGAGATAGATATCCCGG CTCACGCCCGTGCTGCTGTGGTATCGATGGAAGCGCGTTATAACAATTTGATGAAACAGGGTAAAGAGAAAGAAGCCAAT GAATTCCGTCTGGTTGATCCGACCGATGACTCGAATACCACATCAGTACAGTTCTATGAGCGTAAAAGTTACCTGAATCC CTGCCTGGACTCTTCTAAGCATTTTGTCGACAAAGTCATTGGTGAAATGGCGCAGATGCACAAAGAGGCCGGTATGCCGC TGACCACCTGGCATTTCGGGGGCGATGAGGCGAAGAACATCCGTCTGGGGGCGGGTTATCAGGATAAGAATGGCAAAATT GAGCCAGGTAAAGGCATCATCGATATGCGCGTTGAAGATAAACCGTGGGCGAAATCTCAGGTTTGTCAGGACATGGTCAA GCAAGGCAAAGTTCAAGATATTGCTCATCTTTCCAGCTACTTCGCCATTGAAGTCAGCAAACTGGTTAATGCGCACGGTA TCGAAAAAATGCAGGCCTGGCAGGATGGACTGAGAGATGCCAAAGATGCGAGCGCGTTTGCTACCAAGCGTGTTGGCGTC AACTTCTGGGATACCCTCTACTGGGGCGGAGCGGACTCCGTCAACGATTGGGCCAATAAAGGTTATGAAGTCATTGCCTC GAATCCAGATTATGTCTACTTCGATATGCCGTATGAAGTTAACCCAAGTGAACGCGGTTACTACTGGGCGACGCGCTTTA GCGATGAAGCCAAGGTGTTCAGCTTCGCACCTGACAACATGCCACAGAACGCCGAAACCTCGGTTGATCGCGATGGTAAT CATTTCAGTGCGAAGAGTGATAAACCCTGGCCGGGTGTACAGGGTATCTCCGGTCAGTCTTGGAATGAAACGGTACGGAC TGATGAGCAGATGGAGTACATGGCCTTCCCTCGTGTATTACCGCTGGCTGAGCGTGCATGGCATCGCGCATCCTGGGAGC AGGAGTATAAAGCGGGGCGTGAATATAAAGGTGGCGAGACTCAGTGGGTCGATACTCAGGCATTAAGCACGGATTGGCAG CGTTTCGCTAACATTATGGGGCAACGTGAACTGGCAAAACTGGATAAAGCGGGTGTGGCTTACCGCTTGCCAGTACCGGG GGCCAGAGTGGTGGCGGGGCAGTTGGAAGCCAATATTTCCTTGCCAGGCCTCCTTATCGAGTACTCCACTGATGGAGGCA AAAAATGGCAGCAGTATGATGCTAAAGCGCAACCTACTGTCAGCGGTGAAGTGATGATCCGTTCCACCAGCCCAGACGGT AAGCGCAGTAGCCGTGCGGAGCCAGTTAACATCTGA
Upstream 100 bases:
>100_bases TCCGTAATAGCCGGTTCAGTAATAGGTAGGTTTCGTAATAATAAACTCCGATAGCGGCACGCCTGTCACCAATAGTTATT AATTATGGATGAGGTTAGTA
Downstream 100 bases:
>100_bases ATTAGGGTATTTGGCTAATAATATCTGACGCTGTAGCTTGTTTTAGTCACGGTTTTGGTTGCGTCTGGTTAGTGTCTTTT TTTGCATATTAAAGTTGAGT
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 891; Mature: 891
Protein sequence:
>891_residues MNKFKLNALAAITATFGLIGYANGSATNQQVVDQLSTLKVNYKLLDNRAADNGVDCAKLGADWASCNKVMITLTNTGDEI KGQDWAIYFHSIRMILAVDNDQFTVTHLTGDLHKIEPTAKFAGFPANQTIEIPITGEYWQLFATDFMPRWYATSGDAKPK VLASTDTEDINAYLTPFTGDQWKRTKDDNNVLMTPESRFVKNEAVKTLSAANLRGQIIPTPLDVKVYPQDADLSLGVALE LSALPKPASDAIQQRFELLGLALSATGYPIKTVIQPTAFNGDHAVSGAYELKIGEKGAEVIGFDQVGVFYGLQSILSLVP IEGSKTIATLDAKDAPRFDYRGVSLDVGRNFKTKAAVLRLLDQMSAYKLNKFHFHLSDDEGWRIEIPGLPELTDVGSQRC HDLTETTCLLPQLGSGPESNNLGSGYFTRADYIDILKYAKARQIDVIPEIDIPAHARAAVVSMEARYNNLMKQGKEKEAN EFRLVDPTDDSNTTSVQFYERKSYLNPCLDSSKHFVDKVIGEMAQMHKEAGMPLTTWHFGGDEAKNIRLGAGYQDKNGKI EPGKGIIDMRVEDKPWAKSQVCQDMVKQGKVQDIAHLSSYFAIEVSKLVNAHGIEKMQAWQDGLRDAKDASAFATKRVGV NFWDTLYWGGADSVNDWANKGYEVIASNPDYVYFDMPYEVNPSERGYYWATRFSDEAKVFSFAPDNMPQNAETSVDRDGN HFSAKSDKPWPGVQGISGQSWNETVRTDEQMEYMAFPRVLPLAERAWHRASWEQEYKAGREYKGGETQWVDTQALSTDWQ RFANIMGQRELAKLDKAGVAYRLPVPGARVVAGQLEANISLPGLLIEYSTDGGKKWQQYDAKAQPTVSGEVMIRSTSPDG KRSSRAEPVNI
Sequences:
>Translated_891_residues MNKFKLNALAAITATFGLIGYANGSATNQQVVDQLSTLKVNYKLLDNRAADNGVDCAKLGADWASCNKVMITLTNTGDEI KGQDWAIYFHSIRMILAVDNDQFTVTHLTGDLHKIEPTAKFAGFPANQTIEIPITGEYWQLFATDFMPRWYATSGDAKPK VLASTDTEDINAYLTPFTGDQWKRTKDDNNVLMTPESRFVKNEAVKTLSAANLRGQIIPTPLDVKVYPQDADLSLGVALE LSALPKPASDAIQQRFELLGLALSATGYPIKTVIQPTAFNGDHAVSGAYELKIGEKGAEVIGFDQVGVFYGLQSILSLVP IEGSKTIATLDAKDAPRFDYRGVSLDVGRNFKTKAAVLRLLDQMSAYKLNKFHFHLSDDEGWRIEIPGLPELTDVGSQRC HDLTETTCLLPQLGSGPESNNLGSGYFTRADYIDILKYAKARQIDVIPEIDIPAHARAAVVSMEARYNNLMKQGKEKEAN EFRLVDPTDDSNTTSVQFYERKSYLNPCLDSSKHFVDKVIGEMAQMHKEAGMPLTTWHFGGDEAKNIRLGAGYQDKNGKI EPGKGIIDMRVEDKPWAKSQVCQDMVKQGKVQDIAHLSSYFAIEVSKLVNAHGIEKMQAWQDGLRDAKDASAFATKRVGV NFWDTLYWGGADSVNDWANKGYEVIASNPDYVYFDMPYEVNPSERGYYWATRFSDEAKVFSFAPDNMPQNAETSVDRDGN HFSAKSDKPWPGVQGISGQSWNETVRTDEQMEYMAFPRVLPLAERAWHRASWEQEYKAGREYKGGETQWVDTQALSTDWQ RFANIMGQRELAKLDKAGVAYRLPVPGARVVAGQLEANISLPGLLIEYSTDGGKKWQQYDAKAQPTVSGEVMIRSTSPDG KRSSRAEPVNI >Mature_891_residues MNKFKLNALAAITATFGLIGYANGSATNQQVVDQLSTLKVNYKLLDNRAADNGVDCAKLGADWASCNKVMITLTNTGDEI KGQDWAIYFHSIRMILAVDNDQFTVTHLTGDLHKIEPTAKFAGFPANQTIEIPITGEYWQLFATDFMPRWYATSGDAKPK VLASTDTEDINAYLTPFTGDQWKRTKDDNNVLMTPESRFVKNEAVKTLSAANLRGQIIPTPLDVKVYPQDADLSLGVALE LSALPKPASDAIQQRFELLGLALSATGYPIKTVIQPTAFNGDHAVSGAYELKIGEKGAEVIGFDQVGVFYGLQSILSLVP IEGSKTIATLDAKDAPRFDYRGVSLDVGRNFKTKAAVLRLLDQMSAYKLNKFHFHLSDDEGWRIEIPGLPELTDVGSQRC HDLTETTCLLPQLGSGPESNNLGSGYFTRADYIDILKYAKARQIDVIPEIDIPAHARAAVVSMEARYNNLMKQGKEKEAN EFRLVDPTDDSNTTSVQFYERKSYLNPCLDSSKHFVDKVIGEMAQMHKEAGMPLTTWHFGGDEAKNIRLGAGYQDKNGKI EPGKGIIDMRVEDKPWAKSQVCQDMVKQGKVQDIAHLSSYFAIEVSKLVNAHGIEKMQAWQDGLRDAKDASAFATKRVGV NFWDTLYWGGADSVNDWANKGYEVIASNPDYVYFDMPYEVNPSERGYYWATRFSDEAKVFSFAPDNMPQNAETSVDRDGN HFSAKSDKPWPGVQGISGQSWNETVRTDEQMEYMAFPRVLPLAERAWHRASWEQEYKAGREYKGGETQWVDTQALSTDWQ RFANIMGQRELAKLDKAGVAYRLPVPGARVVAGQLEANISLPGLLIEYSTDGGKKWQQYDAKAQPTVSGEVMIRSTSPDG KRSSRAEPVNI
Specific function: Digests the beta-1,4-glycosidic bonds in N- acetylglucosamine (GlcNAc) oligomers (mainly dimers) [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI189181666, Length=337, Percent_Identity=23.4421364985163, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI4504373, Length=392, Percent_Identity=22.9591836734694, Blast_Score=76, Evalue=2e-13, Organism=Drosophila melanogaster, GI24657468, Length=517, Percent_Identity=23.0174081237911, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI17647501, Length=517, Percent_Identity=23.0174081237911, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI281365639, Length=517, Percent_Identity=23.0174081237911, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI24657474, Length=517, Percent_Identity=23.0174081237911, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI17933586, Length=237, Percent_Identity=26.1603375527426, Blast_Score=76, Evalue=8e-14, Organism=Drosophila melanogaster, GI24653074, Length=495, Percent_Identity=25.0505050505051, Blast_Score=75, Evalue=3e-13, Organism=Drosophila melanogaster, GI45551090, Length=495, Percent_Identity=25.0505050505051, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 98961; Mature: 98961
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKFKLNALAAITATFGLIGYANGSATNQQVVDQLSTLKVNYKLLDNRAADNGVDCAKLG CCCEEHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHC ADWASCNKVMITLTNTGDEIKGQDWAIYFHSIRMILAVDNDQFTVTHLTGDLHKIEPTAK CCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCEEEEEECCCCEECCCCHH FAGFPANQTIEIPITGEYWQLFATDFMPRWYATSGDAKPKVLASTDTEDINAYLTPFTGD HCCCCCCCEEEEEECCHHHHHHHHHCCCCEECCCCCCCCEEEECCCCCCCEEEECCCCCC QWKRTKDDNNVLMTPESRFVKNEAVKTLSAANLRGQIIPTPLDVKVYPQDADLSLGVALE CCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEECCCCCEEEECCCCCCEEEEEEE LSALPKPASDAIQQRFELLGLALSATGYPIKTVIQPTAFNGDHAVSGAYELKIGEKGAEV ECCCCCCHHHHHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCE IGFDQVGVFYGLQSILSLVPIEGSKTIATLDAKDAPRFDYRGVSLDVGRNFKTKAAVLRL EEECHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHH LDQMSAYKLNKFHFHLSDDEGWRIEIPGLPELTDVGSQRCHDLTETTCLLPQLGSGPESN HHHHHHCEEEEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC NLGSGYFTRADYIDILKYAKARQIDVIPEIDIPAHARAAVVSMEARYNNLMKQGKEKEAN CCCCCCEEHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCC EFRLVDPTDDSNTTSVQFYERKSYLNPCLDSSKHFVDKVIGEMAQMHKEAGMPLTTWHFG CEEEECCCCCCCCCEEEEEEHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC GDEAKNIRLGAGYQDKNGKIEPGKGIIDMRVEDKPWAKSQVCQDMVKQGKVQDIAHLSSY CCCCCEEEEECCEECCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHH FAIEVSKLVNAHGIEKMQAWQDGLRDAKDASAFATKRVGVNFWDTLYWGGADSVNDWANK HHEEHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHEEECCCCCHHHHHCC GYEVIASNPDYVYFDMPYEVNPSERGYYWATRFSDEAKVFSFAPDNMPQNAETSVDRDGN CEEEEECCCCEEEEECCEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC HFSAKSDKPWPGVQGISGQSWNETVRTDEQMEYMAFPRVLPLAERAWHRASWEQEYKAGR EECCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCC EYKGGETQWVDTQALSTDWQRFANIMGQRELAKLDKAGVAYRLPVPGARVVAGQLEANIS CCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEECCCCCCEEEEEEEECCCC LPGLLIEYSTDGGKKWQQYDAKAQPTVSGEVMIRSTSPDGKRSSRAEPVNI CCEEEEEEECCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MNKFKLNALAAITATFGLIGYANGSATNQQVVDQLSTLKVNYKLLDNRAADNGVDCAKLG CCCEEHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHC ADWASCNKVMITLTNTGDEIKGQDWAIYFHSIRMILAVDNDQFTVTHLTGDLHKIEPTAK CCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCEEEEEECCCCEECCCCHH FAGFPANQTIEIPITGEYWQLFATDFMPRWYATSGDAKPKVLASTDTEDINAYLTPFTGD HCCCCCCCEEEEEECCHHHHHHHHHCCCCEECCCCCCCCEEEECCCCCCCEEEECCCCCC QWKRTKDDNNVLMTPESRFVKNEAVKTLSAANLRGQIIPTPLDVKVYPQDADLSLGVALE CCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEECCCCCEEEECCCCCCEEEEEEE LSALPKPASDAIQQRFELLGLALSATGYPIKTVIQPTAFNGDHAVSGAYELKIGEKGAEV ECCCCCCHHHHHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCE IGFDQVGVFYGLQSILSLVPIEGSKTIATLDAKDAPRFDYRGVSLDVGRNFKTKAAVLRL EEECHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHH LDQMSAYKLNKFHFHLSDDEGWRIEIPGLPELTDVGSQRCHDLTETTCLLPQLGSGPESN HHHHHHCEEEEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC NLGSGYFTRADYIDILKYAKARQIDVIPEIDIPAHARAAVVSMEARYNNLMKQGKEKEAN CCCCCCEEHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCC EFRLVDPTDDSNTTSVQFYERKSYLNPCLDSSKHFVDKVIGEMAQMHKEAGMPLTTWHFG CEEEECCCCCCCCCEEEEEEHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC GDEAKNIRLGAGYQDKNGKIEPGKGIIDMRVEDKPWAKSQVCQDMVKQGKVQDIAHLSSY CCCCCEEEEECCEECCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHH FAIEVSKLVNAHGIEKMQAWQDGLRDAKDASAFATKRVGVNFWDTLYWGGADSVNDWANK HHEEHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHEEECCCCCHHHHHCC GYEVIASNPDYVYFDMPYEVNPSERGYYWATRFSDEAKVFSFAPDNMPQNAETSVDRDGN CEEEEECCCCEEEEECCEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC HFSAKSDKPWPGVQGISGQSWNETVRTDEQMEYMAFPRVLPLAERAWHRASWEQEYKAGR EECCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCC EYKGGETQWVDTQALSTDWQRFANIMGQRELAKLDKAGVAYRLPVPGARVVAGQLEANIS CCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEECCCCCCEEEEEEEECCCC LPGLLIEYSTDGGKKWQQYDAKAQPTVSGEVMIRSTSPDGKRSSRAEPVNI CCEEEEEEECCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8621090; 8673609 [H]