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The map label for this gene is ybfM [H]

Identifier: 170025215

GI number: 170025215

Start: 3289238

End: 3290659

Strand: Reverse

Name: ybfM [H]

Synonym: YPK_2993

Alternate gene names: 170025215

Gene position: 3290659-3289238 (Counterclockwise)

Preceding gene: 170025216

Following gene: 170025214

Centisome position: 70.17

GC content: 49.09

Gene sequence:

>1422_bases
ATGGTTACGCACTGTCAGATTGCTGCACACAAGGCTAAACGTAAAACGTTAGCGCTCGCCATCGCGGGTGTATTGTTCGG
AACAGGATTTATGGCGGCCCCAGAGGCCAGAGCTGACGGTTTTATTGATGATTCATCCCTGGCTGGTGGGATTTATTATT
GGCAGCGACAGCGTGATCGTAAGGATATGACGCCAACCAGCCCAGAGTACGGCAAATATGTCGCTAACCTGCATCACTCC
ACTTTTAACGCTAATTTAGCTTTCTCTTCAGGTTATGTGGCGGACATGTTTGGTCTCGATTTAGCGGCATTTGGCGCGGT
TGAAATATCGAACAGCGGCCCGGCAGCACCAAATGAAATTGGCTTCAGTGACGCCAAAACCCGCTGGGACGAAAAGTGGA
CCGGGGATAAGAGTGGCGTCAGTGTTTATAGAGCCGCAGCCAAATTTAAATTAGGTGATTTCTGGGCGCGCGGGGGGTAT
ATCCAGCCAACGGGGCAGACACTGTTAGCACCACACTGGAGCTTTATGCCAGGGACTTATCGTGGCGCGGAAGGTGGCGC
GAAATTTGATTTTGATACTGCTGGCGCGTTGTCCATGTCTTATATGTGGACAGATGAATATAAAGCGCCGTGGTACCAAA
ATATGTATCACTTCCGTCAAGCGGATGGCCTGACCGGTGTCAGTTACCTGCATTCATTTGGTGCTAAATACGACTTTAAA
AATAATCTGGTGATGGAAGCGGCTTTCGGCCAGGCTAAAGATTATATGGACCAGTACTTTGCTAAAGCGTCCTATGCCTT
CCCGGTTGCCGGTAATGATCTGCGCACCACCTACCAATTCTATGGCGCAAAAGACAAAGTTGATGGCGGTGCGAGCAATG
CTAATGATGTCTATGATGGGCTAGCCTGGCTACAAGCGCTGACGCTGGGTTACACCACGGGTCCATTTGACCTGCGTTTG
GAAGGGACCTGGGCTAAAGCTGATGGTAACCAAGGTTACTTCCTACAACGTATGACCCCAGGCTATGCCACATCAAATGG
TCGTTTGGATGTCTGGTGGGATTCCCGCTCTGACTTCAACGCCAACGGTGAAAAAGCACTGTTTGGTGGTGTGATGTATG
ACCTGAAAAATTGGAATATGGCTGGCTGGTCGGTAGGCACCTCCTATGCTTATGGTTGGGATGCGAAGCCAAGCACCAAT
CCAAAATTTGACCAAAATACCCGTCTGAAAGAATCAGCATGGAACTTTGACATTCTCTATACCCTGCAAGAAGGCCGGGC
AAAAGGGACGCTCTTCAAGCTGCACTACACCCTGTATGACAACCACACCAATATCCCAAGTTATGGCGGTGGGTTCGGTA
ACGTCTTCCAAGATGAAAAAGACGTTAAATTTATCGTAATTGCACCATTTACTCTCTTCTGA

Upstream 100 bases:

>100_bases
CAAAATTTTACCCACTTAGGGTTTTTAAGGCGAAGTCTGTGAGCTGTGGTGGACTCAGGCAACGCACTTCAAATGTGATG
TCAAAGAGGAATTTTTTCAT

Downstream 100 bases:

>100_bases
TTTTGATAATTCTCCCCGGCAGTGATGTTGGGGAGATAGCCAGCAGCGTTGGATGGCTCGAAAATCAGATAACCCGCGTT
GCATTGATGCAGCCTATACC

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MVTHCQIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLAGGIYYWQRQRDRKDMTPTSPEYGKYVANLHHS
TFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEIGFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGY
IQPTGQTLLAPHWSFMPGTYRGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDGLAWLQALTLGYTTGPFDLRL
EGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFNANGEKALFGGVMYDLKNWNMAGWSVGTSYAYGWDAKPSTN
PKFDQNTRLKESAWNFDILYTLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF

Sequences:

>Translated_473_residues
MVTHCQIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLAGGIYYWQRQRDRKDMTPTSPEYGKYVANLHHS
TFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEIGFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGY
IQPTGQTLLAPHWSFMPGTYRGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDGLAWLQALTLGYTTGPFDLRL
EGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFNANGEKALFGGVMYDLKNWNMAGWSVGTSYAYGWDAKPSTN
PKFDQNTRLKESAWNFDILYTLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF
>Mature_473_residues
MVTHCQIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLAGGIYYWQRQRDRKDMTPTSPEYGKYVANLHHS
TFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEIGFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGY
IQPTGQTLLAPHWSFMPGTYRGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDGLAWLQALTLGYTTGPFDLRL
EGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFNANGEKALFGGVMYDLKNWNMAGWSVGTSYAYGWDAKPSTN
PKFDQNTRLKESAWNFDILYTLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=468, Percent_Identity=68.3760683760684, Blast_Score=650, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52589; Mature: 52589

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTHCQIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLAGGIYYWQRQRDR
CCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHCCC
KDMTPTSPEYGKYVANLHHSTFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEI
CCCCCCCCHHHHHHHHHCCCEEECEEEECCCCCHHHHCCCHHHEEEEEECCCCCCCCCCC
GFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGYIQPTGQTLLAPHWSFMPGTY
CCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCEECCCCCEEECCCCCCCCCCC
RGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
CCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEECC
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDG
CCEEEEEHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
LAWLQALTLGYTTGPFDLRLEGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFN
HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCEECCCCCEEEEECCCCCCC
ANGEKALFGGVMYDLKNWNMAGWSVGTSYAYGWDAKPSTNPKFDQNTRLKESAWNFDILY
CCCCEEEECCEEEECCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEE
TLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF
EEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEECC
>Mature Secondary Structure
MVTHCQIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLAGGIYYWQRQRDR
CCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHCCC
KDMTPTSPEYGKYVANLHHSTFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEI
CCCCCCCCHHHHHHHHHCCCEEECEEEECCCCCHHHHCCCHHHEEEEEECCCCCCCCCCC
GFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGYIQPTGQTLLAPHWSFMPGTY
CCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCEECCCCCEEECCCCCCCCCCC
RGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
CCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEECC
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDG
CCEEEEEHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
LAWLQALTLGYTTGPFDLRLEGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFN
HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCEECCCCCEEEEECCCCCCC
ANGEKALFGGVMYDLKNWNMAGWSVGTSYAYGWDAKPSTNPKFDQNTRLKESAWNFDILY
CCCCEEEECCEEEECCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEE
TLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF
EEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]