| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is arnT [H]
Identifier: 170024074
GI number: 170024074
Start: 2034848
End: 2036512
Strand: Direct
Name: arnT [H]
Synonym: YPK_1835
Alternate gene names: 170024074
Gene position: 2034848-2036512 (Clockwise)
Preceding gene: 170024073
Following gene: 170024075
Centisome position: 43.39
GC content: 45.05
Gene sequence:
>1665_bases ATGAAATTATTAAAAGACAGTGGCGCAGCATTATTGGCGCTATTTTTTGTATTGGTTTATTTGTTACCGGTGAATAGCCG TTTGTTATGGCAACCCGATGAAACTCGCTATGCTGAAATTAGTCGTGAAATGCTGCAGCGTGGCGACTGGGTCGTGCCGT ATTTCATGGATATACGTTATTTTGAAAAACCGGTCGCCGGGTATTGGTTTAATAACATTAGCCAATGGATCTTTGGTGAC AGTAATTTTGCAGTGAGATTTGGCTCTATTTTTAGCACGGCATTGAGTGCCGTATTAGTTTATTGGCTGGCAACCTTATT ATGGCGTAATCGGTCAACCTCGGTACTGGCTACATTAATTTATCTTTCCTTTTTATTGGTGTTTGGCATTGGTACCTATG CAGTGCTGGACCCCATGATTTCTCTGTGGTTGACAGCGGCGATGGTGAGTTTTTATCTCACGCTAAAAGCCGAAAATTGG CAACAGAAAGTCGGCGCATATGCATTACTTGGGGTTGCTTGCGGTATGGGGTTTATGACCAAAGGCTTTCTGGCATTAGC GGTCCCGGTGATTGCGGTATTACCCATTGTCATCCAGCAAAAAAGGATAAAAGACCTTGTTGTTTTTGGTCCGATAGCAA TTGTGTGCGCGGTATTATTAAGTTTACCGTGGGCTTTGGCGATCGCCCAACGAGAACCTGATTTCTGGAACTATTTCTTT TGGGTTGAACATATTCAGCGCTTTGCGGAAGCGAGTGCTCAACATAAATCTCCCATTTGGTATTACCTACCCATTTTATG TATTGGTGTCCTGCCTTGGCTAGGGCTATTACCTGGAGCCTTATTTAAAGGTTGGCGTGAGCGGGCAACAAAACCAGAAT TATTCTTTTTACTCAGTTGGGTGGTTATGCCACTCCTATTTTTTAGCGTAGCAAAAGGGAAGCTACCGACTTATATTTTG CCCTGTATGGCACCTCTATCCTTGCTAATGGCGGCATATGCGACGGATTGCGCTAATAATATACGTATGCGGGCATTGAA AATAAACGGTGTAATAAATCTACTCTTCGGGGTTGCCTGTGCGTTAGTCATCGTCGTTATTGGCTTGGGGTTAGTGAAGG ATATCGTGGCTTATGGGCCGCAAGAGAATCAGAAAGTTTGGTTAGGTGTGTTGGCATTTGCTGGTTGGGGAGTCACTGGG TTTATTACCTTACGCAATAACGCCCGAAACTGGCGCTGGGCAGCAGCTTGCCCACTGTTATTCATTTTGTTAGTGGGTTA CCTAATTCCACAACAAGTGGTGGACTCAAAGCAACCGCAAAACTTTATCAAAAATAATTTTAGTGAACTCAGCTCCAGCC GCTATGTGCTGACCGACAGCGTTGGTGTTGCCGCTGGGCTGGCATGGGAGCTAAAACGCAGTGATATACTGATGTTCAGT GAAAAAGGTGAGCTAACCTATGGTTTGGCCTACCCAGACAGTCAGGATAATTATATCAGTAATGACGATTTCCCCACATG GCTTGCGCAGGCGAGAAAAAAAGGCGACGTCTCATTGGTCGTGCAATTAGCCAGAAATGAAGCACTCCCGGCCCATCTGC CGTCAGCGGATAAGGTGAATTTAATGAATCGACTCGCCCTGTTGTGGTACCAGAAAACACCATGA
Upstream 100 bases:
>100_bases CGTCAGATTTACAATTACTGCCTGTGGGCAAAGTAATACGCGCTACATTTCCTGGCCGGGAAGGTTGGTTGGGTTGTCAA TCAGACATAAAGGATGCTGA
Downstream 100 bases:
>100_bases ACAGCTACCTACTCTTGCCGATGGTCAGTCTATTAACCTGTATTGGGCAATTATGTCAAAAACAGGCTGCGCAGTGTTGG GAGCAACCGCAGGCCCGGCG
Product: 4-amino-4-deoxy-L-arabinose transferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 554; Mature: 554
Protein sequence:
>554_residues MKLLKDSGAALLALFFVLVYLLPVNSRLLWQPDETRYAEISREMLQRGDWVVPYFMDIRYFEKPVAGYWFNNISQWIFGD SNFAVRFGSIFSTALSAVLVYWLATLLWRNRSTSVLATLIYLSFLLVFGIGTYAVLDPMISLWLTAAMVSFYLTLKAENW QQKVGAYALLGVACGMGFMTKGFLALAVPVIAVLPIVIQQKRIKDLVVFGPIAIVCAVLLSLPWALAIAQREPDFWNYFF WVEHIQRFAEASAQHKSPIWYYLPILCIGVLPWLGLLPGALFKGWRERATKPELFFLLSWVVMPLLFFSVAKGKLPTYIL PCMAPLSLLMAAYATDCANNIRMRALKINGVINLLFGVACALVIVVIGLGLVKDIVAYGPQENQKVWLGVLAFAGWGVTG FITLRNNARNWRWAAACPLLFILLVGYLIPQQVVDSKQPQNFIKNNFSELSSSRYVLTDSVGVAAGLAWELKRSDILMFS EKGELTYGLAYPDSQDNYISNDDFPTWLAQARKKGDVSLVVQLARNEALPAHLPSADKVNLMNRLALLWYQKTP
Sequences:
>Translated_554_residues MKLLKDSGAALLALFFVLVYLLPVNSRLLWQPDETRYAEISREMLQRGDWVVPYFMDIRYFEKPVAGYWFNNISQWIFGD SNFAVRFGSIFSTALSAVLVYWLATLLWRNRSTSVLATLIYLSFLLVFGIGTYAVLDPMISLWLTAAMVSFYLTLKAENW QQKVGAYALLGVACGMGFMTKGFLALAVPVIAVLPIVIQQKRIKDLVVFGPIAIVCAVLLSLPWALAIAQREPDFWNYFF WVEHIQRFAEASAQHKSPIWYYLPILCIGVLPWLGLLPGALFKGWRERATKPELFFLLSWVVMPLLFFSVAKGKLPTYIL PCMAPLSLLMAAYATDCANNIRMRALKINGVINLLFGVACALVIVVIGLGLVKDIVAYGPQENQKVWLGVLAFAGWGVTG FITLRNNARNWRWAAACPLLFILLVGYLIPQQVVDSKQPQNFIKNNFSELSSSRYVLTDSVGVAAGLAWELKRSDILMFS EKGELTYGLAYPDSQDNYISNDDFPTWLAQARKKGDVSLVVQLARNEALPAHLPSADKVNLMNRLALLWYQKTP >Mature_554_residues MKLLKDSGAALLALFFVLVYLLPVNSRLLWQPDETRYAEISREMLQRGDWVVPYFMDIRYFEKPVAGYWFNNISQWIFGD SNFAVRFGSIFSTALSAVLVYWLATLLWRNRSTSVLATLIYLSFLLVFGIGTYAVLDPMISLWLTAAMVSFYLTLKAENW QQKVGAYALLGVACGMGFMTKGFLALAVPVIAVLPIVIQQKRIKDLVVFGPIAIVCAVLLSLPWALAIAQREPDFWNYFF WVEHIQRFAEASAQHKSPIWYYLPILCIGVLPWLGLLPGALFKGWRERATKPELFFLLSWVVMPLLFFSVAKGKLPTYIL PCMAPLSLLMAAYATDCANNIRMRALKINGVINLLFGVACALVIVVIGLGLVKDIVAYGPQENQKVWLGVLAFAGWGVTG FITLRNNARNWRWAAACPLLFILLVGYLIPQQVVDSKQPQNFIKNNFSELSSSRYVLTDSVGVAAGLAWELKRSDILMFS EKGELTYGLAYPDSQDNYISNDDFPTWLAQARKKGDVSLVVQLARNEALPAHLPSADKVNLMNRLALLWYQKTP
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=538, Percent_Identity=53.7174721189591, Blast_Score=590, Evalue=1e-170,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 62306; Mature: 62306
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLKDSGAALLALFFVLVYLLPVNSRLLWQPDETRYAEISREMLQRGDWVVPYFMDIRY CCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHH FEKPVAGYWFNNISQWIFGDSNFAVRFGSIFSTALSAVLVYWLATLLWRNRSTSVLATLI HHCCHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH YLSFLLVFGIGTYAVLDPMISLWLTAAMVSFYLTLKAENWQQKVGAYALLGVACGMGFMT HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCHHHHH KGFLALAVPVIAVLPIVIQQKRIKDLVVFGPIAIVCAVLLSLPWALAIAQREPDFWNYFF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH WVEHIQRFAEASAQHKSPIWYYLPILCIGVLPWLGLLPGALFKGWRERATKPELFFLLSW HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VVMPLLFFSVAKGKLPTYILPCMAPLSLLMAAYATDCANNIRMRALKINGVINLLFGVAC HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH ALVIVVIGLGLVKDIVAYGPQENQKVWLGVLAFAGWGVTGFITLRNNARNWRWAAACPLL HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHH FILLVGYLIPQQVVDSKQPQNFIKNNFSELSSSRYVLTDSVGVAAGLAWELKRSDILMFS HHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCEEEECCCHHHHHHHHEECCCCEEEEE EKGELTYGLAYPDSQDNYISNDDFPTWLAQARKKGDVSLVVQLARNEALPAHLPSADKVN CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHH LMNRLALLWYQKTP HHHHHHHHHCCCCC >Mature Secondary Structure MKLLKDSGAALLALFFVLVYLLPVNSRLLWQPDETRYAEISREMLQRGDWVVPYFMDIRY CCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHH FEKPVAGYWFNNISQWIFGDSNFAVRFGSIFSTALSAVLVYWLATLLWRNRSTSVLATLI HHCCHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH YLSFLLVFGIGTYAVLDPMISLWLTAAMVSFYLTLKAENWQQKVGAYALLGVACGMGFMT HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCHHHHH KGFLALAVPVIAVLPIVIQQKRIKDLVVFGPIAIVCAVLLSLPWALAIAQREPDFWNYFF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH WVEHIQRFAEASAQHKSPIWYYLPILCIGVLPWLGLLPGALFKGWRERATKPELFFLLSW HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VVMPLLFFSVAKGKLPTYILPCMAPLSLLMAAYATDCANNIRMRALKINGVINLLFGVAC HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH ALVIVVIGLGLVKDIVAYGPQENQKVWLGVLAFAGWGVTGFITLRNNARNWRWAAACPLL HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHH FILLVGYLIPQQVVDSKQPQNFIKNNFSELSSSRYVLTDSVGVAAGLAWELKRSDILMFS HHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCEEEECCCHHHHHHHHEECCCCEEEEE EKGELTYGLAYPDSQDNYISNDDFPTWLAQARKKGDVSLVVQLARNEALPAHLPSADKVN CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHH LMNRLALLWYQKTP HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA