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The map label for this gene is arnD [H]

Identifier: 170024073

GI number: 170024073

Start: 2033946

End: 2034851

Strand: Direct

Name: arnD [H]

Synonym: YPK_1834

Alternate gene names: 170024073

Gene position: 2033946-2034851 (Clockwise)

Preceding gene: 170024072

Following gene: 170024074

Centisome position: 43.37

GC content: 49.12

Gene sequence:

>906_bases
ATGAAGCAAGTTGGCCTGAGGATTGATGTCGATACCTACCGAGGAACGCAGTACGGGGTGCCATCATTACTGACTGTTTT
AGAAAAACATGACATTCGTGCCAGTTTTTTCTTCAGTGTTGGGCCGGATAATATGGGACGCCATTTATGGCGCCTTTTTC
GTCCGCGCTTTTTATGGAAGATGCTACGTTCTAATGCTGCCTCGCTTTACGGTTGGGATATTTTACTGGCGGGCACGGCT
TGGCCAGGTAAGAAGATCGCTAAAGACTTTGGTCCGTTAATGAAAGCAGCGGCCATGGCGGGGCATGAAGTGGGGTTGCA
TGCTTGGGACCATCAAGGCTGGCAGGCCAACGTCGCTTCATGGTCACAGCAACAACTGACTGAGCAAGTACAGAGAGGAG
TTGATACTTTACAGCAGAGTATTGGTCAACCCATTAGCTGTTCTGCTGCTGCGGGGTGGCGCGCCGATGAACGGGTTCTT
GCGGTAAAACAGCAATTCGATTTTAGTTATAACAGCGATTGCCGGGGGACCCATCCTTTCCGGCCTTTGTTGCCTAATGG
CAGCTTAGGGAGTGTACAAATTCCCGTGACGCTGCCAACTTACGATGAAGTTGTCGGCGGTGAGGTGCAAGCTGAAAACT
TCAATGACTTTATTATTGACGCCATCCTACGTGATAGCGGGGTATCGGTATACACCATTCATGCTGAAGTTGAGGGGATG
TCTCAGGCAGCAATGTTTGAGCAGCTCTTGATGAGAGCAAAGCAACAAGATATTGAGTTTTGTCCGCTCAGTAAGCTGCT
ACCGTCAGATTTACAATTACTGCCTGTGGGCAAAGTAATACGCGCTACATTTCCTGGCCGGGAAGGTTGGTTGGGTTGTC
AATCAGACATAAAGGATGCTGAATGA

Upstream 100 bases:

>100_bases
CAGAAATTGCTATGCAACAAACGGTCACTGAGACGCTGGACTTTTTCTTGCGCGCTGCCGTAATTGAGAAAACTGCAGCC
CCTAAAGATGAGTTGAACGC

Downstream 100 bases:

>100_bases
AATTATTAAAAGACAGTGGCGCAGCATTATTGGCGCTATTTTTTGTATTGGTTTATTTGTTACCGGTGAATAGCCGTTTG
TTATGGCAACCCGATGAAAC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWKMLRSNAASLYGWDILLAGTA
WPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVASWSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVL
AVKQQFDFSYNSDCRGTHPFRPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRATFPGREGWLGCQSDIKDAE

Sequences:

>Translated_301_residues
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWKMLRSNAASLYGWDILLAGTA
WPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVASWSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVL
AVKQQFDFSYNSDCRGTHPFRPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRATFPGREGWLGCQSDIKDAE
>Mature_301_residues
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWKMLRSNAASLYGWDILLAGTA
WPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVASWSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVL
AVKQQFDFSYNSDCRGTHPFRPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRATFPGREGWLGCQSDIKDAE

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=294, Percent_Identity=61.9047619047619, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33535; Mature: 33535

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWK
CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVAS
HHHHCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHH
WSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVLAVKQQFDFSYNSDCRGTHPF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
RPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
CCCCCCCCCCCEEEEEECCCHHHHHCCEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCH
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRATFPGREGWLGCQSDIKDA
HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCC
E
C
>Mature Secondary Structure
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWK
CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVAS
HHHHCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHH
WSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVLAVKQQFDFSYNSDCRGTHPF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
RPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
CCCCCCCCCCCEEEEEECCCHHHHHCCEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCH
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRATFPGREGWLGCQSDIKDA
HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA