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The map label for this gene is ecpD [H]

Identifier: 170024026

GI number: 170024026

Start: 1983606

End: 1984385

Strand: Direct

Name: ecpD [H]

Synonym: YPK_1787

Alternate gene names: 170024026

Gene position: 1983606-1984385 (Clockwise)

Preceding gene: 170024025

Following gene: 170024027

Centisome position: 42.3

GC content: 43.85

Gene sequence:

>780_bases
ATGCGCAGAACGCTCCTTACTATATTGTCCTTTTTAAGGACAGTGCGACTCTTAACGACACTGACACTCTTAATATTATC
GGTTGTGGCGACTGTGGCTCGTGCTGAAGTGATGATCAGTGGGACACGTGTTATTTATGAAGAGAAACAACGTGAGGGGG
TGGTAAAGGTTTCCAATACGGGCGATATGCCGGTCCTGCTTCAGGCCTGGATAGATAAAGGTGATGCGAACGCACGCCCA
GAGGCTATCAAGGTGCCGTTTAGTGTAATCCCCCCAGTAGTACGTTTAGACCCTAAAAGGGATCAGACTATTCGTCTTTT
TCGCACTGATGGTGGATTAACGGCTGATCGTGAAACCCTATTTTGGTTTAACTTATTAGAAGTCCCGCCAAAGCCAATCC
AAAGTGCGGCTGGTGGTGAGAACAAAATGCAATTGGCTTTCCGTACCAGAATTAAAATGTTTTACCGCCCTGAAGGATTA
ACCGTATTACCTGCGCAAGCGGCCAAGAGTCTCGCATTTTCAATGAAAGGCAATCAGATCGTCATAAAGAATGCCTCACC
GTATTACATTACCTTGAGAAAGCTAGAATTACGCACGTCAGAGAAAGGGCCTGTATTGGCTAATTTTACTAAAATCAATA
ATAAAATGGTTGCCCCTTTTAGTGAACTAAGCTTACCTACGAGTGCAAAAGCATCGATCAATAATTCGGCACAAGTTTTT
TATTCTGTTATTAATGATCAGGGCGGCGAAACTCAAGGTACGCAAAAACTGACCCAATAA

Upstream 100 bases:

>100_bases
ACTTGTTCATGATTAACTAACGCGGATAGCAAGTCCAATCCGGCATAAAATGGGAGCTTAGTGCTCCCAGCTTTATAAGT
TCGACATCATTGGAACCCAT

Downstream 100 bases:

>100_bases
AACTATAAAAAATACAAATTAAGGGTAATTTGTATTTTTTGCACTTTTATATACTGCATTTAATTTAATGGCCTCGATAT
AATGCTTAGTGCTTTCATAT

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRRTLLTILSFLRTVRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKGDANARP
EAIKVPFSVIPPVVRLDPKRDQTIRLFRTDGGLTADRETLFWFNLLEVPPKPIQSAAGGENKMQLAFRTRIKMFYRPEGL
TVLPAQAAKSLAFSMKGNQIVIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVF
YSVINDQGGETQGTQKLTQ

Sequences:

>Translated_259_residues
MRRTLLTILSFLRTVRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKGDANARP
EAIKVPFSVIPPVVRLDPKRDQTIRLFRTDGGLTADRETLFWFNLLEVPPKPIQSAAGGENKMQLAFRTRIKMFYRPEGL
TVLPAQAAKSLAFSMKGNQIVIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVF
YSVINDQGGETQGTQKLTQ
>Mature_259_residues
MRRTLLTILSFLRTVRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKGDANARP
EAIKVPFSVIPPVVRLDPKRDQTIRLFRTDGGLTADRETLFWFNLLEVPPKPIQSAAGGENKMQLAFRTRIKMFYRPEGL
TVLPAQAAKSLAFSMKGNQIVIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVF
YSVINDQGGETQGTQKLTQ

Specific function: Probably mediates assembly of a pilin [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=244, Percent_Identity=40.9836065573771, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1788428, Length=240, Percent_Identity=34.1666666666667, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1789532, Length=236, Percent_Identity=32.6271186440678, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790771, Length=244, Percent_Identity=31.9672131147541, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786743, Length=240, Percent_Identity=29.5833333333333, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786936, Length=230, Percent_Identity=30.4347826086957, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787171, Length=237, Percent_Identity=29.957805907173, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788677, Length=156, Percent_Identity=30.7692307692308, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082203, Length=232, Percent_Identity=28.0172413793103, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=30.9322033898305, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28780; Mature: 28780

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTLLTILSFLRTVRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEHHCCCCEEEEECC
GDMPVLLQAWIDKGDANARPEAIKVPFSVIPPVVRLDPKRDQTIRLFRTDGGLTADRETL
CCCHHHHHHHHCCCCCCCCCCEEECCHHHCCCCEEECCCCCCEEEEEEECCCCCCCCCEE
FWFNLLEVPPKPIQSAAGGENKMQLAFRTRIKMFYRPEGLTVLPAQAAKSLAFSMKGNQI
EEEEEECCCCHHHHHCCCCCCCEEEHEEEEEEEEECCCCCEEECHHHHHHEEEEECCCEE
VIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVF
EEECCCCEEEEEEEEEEECCCCCCEEEEEEECCCEEECCHHHHCCCCCCCCCCCCHHHHH
YSVINDQGGETQGTQKLTQ
HEECCCCCCCCCCHHHHCC
>Mature Secondary Structure
MRRTLLTILSFLRTVRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEHHCCCCEEEEECC
GDMPVLLQAWIDKGDANARPEAIKVPFSVIPPVVRLDPKRDQTIRLFRTDGGLTADRETL
CCCHHHHHHHHCCCCCCCCCCEEECCHHHCCCCEEECCCCCCEEEEEEECCCCCCCCCEE
FWFNLLEVPPKPIQSAAGGENKMQLAFRTRIKMFYRPEGLTVLPAQAAKSLAFSMKGNQI
EEEEEECCCCHHHHHCCCCCCCEEEHEEEEEEEEECCCCCEEECHHHHHHEEEEECCCEE
VIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVF
EEECCCCEEEEEEEEEEECCCCCCEEEEEEECCCEEECCHHHHCCCCCCCCCCCCHHHHH
YSVINDQGGETQGTQKLTQ
HEECCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]