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The map label for this gene is xp55 [H]

Identifier: 170023371

GI number: 170023371

Start: 1264220

End: 1265797

Strand: Direct

Name: xp55 [H]

Synonym: YPK_1125

Alternate gene names: 170023371

Gene position: 1264220-1265797 (Clockwise)

Preceding gene: 170023370

Following gene: 170023372

Centisome position: 26.96

GC content: 48.23

Gene sequence:

>1578_bases
ATGTCTAGACGTCTATGGCTTCGAAACACCTTGGTGGCAACTGCGTTATTGAGCGTTTTTTCTGTCCCAGTGAGTGCCGC
AACTCACACATTGCAATTAGCTATCGGTGATGAGCCGACCGAAGGTTTTGACCCCATGTTAGGCTGGAGTCACGGTAGCT
ATCTATTACTTCACAGCCCGCTACTGAAACAAAATGAAGATTTTAGTTGGGATAGTCTGTTGCTCAGCCAGTACCAGCCT
AGTGATGATGGAAAAACGTGGTTGCTGACACTTAAGCCTGACCTTAAGTTCTCAGATGGCTCTCCTCTCACCGCAAAAGA
TGTGGCTTTTACCTACAACAACGCCGCGGCCAGTGGCGGGAAAGTGGATATGGGGAATTTCCTCAGCGCTGAAGTTATCG
ATCCCCTCAATGTCCGCATCCACTTGAAAGCACCACAAAGTACATTTGTGAATGTGCTGGGTTCACTGGGCATTGTTTCA
GCCGATAAATACAATGCAAAAACCTATGCACAAAAACCTATTGGCGCGGGTCCCTATCGTTTAGTGAGTTTCCAGCCGGG
TCAGCAAATGATCGTGGAAGCTAACCCTTATTACGCGGGCAATAAGAACGATTTTGATAAATTGATTTTTGTTTTCCTTG
ATGAAGATAGTGCCTTCGCTGCCGCGCAAAGTGGGCAATTAGGTGTCGTGCGTATCCCTCCCTCCATGGCAGTAGGTTCG
GTTAATAACATGAAGTTATGGGTCCGGCCAAGCGTCGAAAATCGTGGCATTGTGTTCCCAACCACTCCTGCAGGCAAAAA
AGACGCACATGGTTACCCCATTGGCAATGATGTGACCGCCGATGTTGCTATCCGTCGTGCCATTAACTACGCCATTAATC
GCCAATTATTGGCCGATCAAATCATGGAAGGTCATGCTATTCCGGCCTATACCGGAGTGCAGGGCTTGCCATGGAATAAC
CCTGATTCAGCGATTAAAGATGGTGATATTGATAAAGCTAAACAGATATTGGAGCAAGCGGGCTGGCAGCTTAATAGCCA
AGGCATCAGAGAGAAAAATGGCCTACCGGCTAAGATAACGCTTTGGTATACCAGCGGTGATACCACCCGCCGGGATTTGG
CACAGGCGTTACGCTCGATGTTGAAACCTATCGGTATCGATGTGGATTTAAAATCCGGCAGTTGGGAAACGGTTGAGCGC
AATATGCATGCCAACCCAACTTTATTTGGCTGGGGGAGTCTTGATCCTATGGAGTTGTATCATCATTACAGCAGCAATGC
GGCTGGTGTTGAATATTATAACCCCGGTTACTACAAGAATCCGATGGTCGATAAACATCTGCAACAGGCGTTGGATGCAC
CGACCTGGCAGCAAGCGGTACCCTTCTGGCAACAGGTGGATTGGGATGGTACGACCGGTGCCGGTATCCGTGGCGATGCT
GCGTGGGCATGGTTGTTGAACATCCAGCATACTTATCTGGCCAATAACTGCGTTGATTTAGGTAAAGGAACACCGGAAAT
TCACGGCTCCTGGTCATTGCTCAATAGTATTGATAGCTGGAAATGGACCTGTCAGTAA

Upstream 100 bases:

>100_bases
CCCATATTTATGTTTAGTGCTACGCTTAATAATTCGTTGAATCTGTGCCTGACAGGCAATCACTTATATATTCGCTGATT
GATTTATCAAAGGAAGATTA

Downstream 100 bases:

>100_bases
TGAAGGGGATCTCGCTGTTTACTCTGCGCTTAATTTGCCTGCTGCTGGTCACCGCAGCCGGTACTTTTACATTGCTGAGT
TTTTCCCCTGTTGACCCTAT

Product: extracellular solute-binding protein

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MSRRLWLRNTLVATALLSVFSVPVSAATHTLQLAIGDEPTEGFDPMLGWSHGSYLLLHSPLLKQNEDFSWDSLLLSQYQP
SDDGKTWLLTLKPDLKFSDGSPLTAKDVAFTYNNAAASGGKVDMGNFLSAEVIDPLNVRIHLKAPQSTFVNVLGSLGIVS
ADKYNAKTYAQKPIGAGPYRLVSFQPGQQMIVEANPYYAGNKNDFDKLIFVFLDEDSAFAAAQSGQLGVVRIPPSMAVGS
VNNMKLWVRPSVENRGIVFPTTPAGKKDAHGYPIGNDVTADVAIRRAINYAINRQLLADQIMEGHAIPAYTGVQGLPWNN
PDSAIKDGDIDKAKQILEQAGWQLNSQGIREKNGLPAKITLWYTSGDTTRRDLAQALRSMLKPIGIDVDLKSGSWETVER
NMHANPTLFGWGSLDPMELYHHYSSNAAGVEYYNPGYYKNPMVDKHLQQALDAPTWQQAVPFWQQVDWDGTTGAGIRGDA
AWAWLLNIQHTYLANNCVDLGKGTPEIHGSWSLLNSIDSWKWTCQ

Sequences:

>Translated_525_residues
MSRRLWLRNTLVATALLSVFSVPVSAATHTLQLAIGDEPTEGFDPMLGWSHGSYLLLHSPLLKQNEDFSWDSLLLSQYQP
SDDGKTWLLTLKPDLKFSDGSPLTAKDVAFTYNNAAASGGKVDMGNFLSAEVIDPLNVRIHLKAPQSTFVNVLGSLGIVS
ADKYNAKTYAQKPIGAGPYRLVSFQPGQQMIVEANPYYAGNKNDFDKLIFVFLDEDSAFAAAQSGQLGVVRIPPSMAVGS
VNNMKLWVRPSVENRGIVFPTTPAGKKDAHGYPIGNDVTADVAIRRAINYAINRQLLADQIMEGHAIPAYTGVQGLPWNN
PDSAIKDGDIDKAKQILEQAGWQLNSQGIREKNGLPAKITLWYTSGDTTRRDLAQALRSMLKPIGIDVDLKSGSWETVER
NMHANPTLFGWGSLDPMELYHHYSSNAAGVEYYNPGYYKNPMVDKHLQQALDAPTWQQAVPFWQQVDWDGTTGAGIRGDA
AWAWLLNIQHTYLANNCVDLGKGTPEIHGSWSLLNSIDSWKWTCQ
>Mature_524_residues
SRRLWLRNTLVATALLSVFSVPVSAATHTLQLAIGDEPTEGFDPMLGWSHGSYLLLHSPLLKQNEDFSWDSLLLSQYQPS
DDGKTWLLTLKPDLKFSDGSPLTAKDVAFTYNNAAASGGKVDMGNFLSAEVIDPLNVRIHLKAPQSTFVNVLGSLGIVSA
DKYNAKTYAQKPIGAGPYRLVSFQPGQQMIVEANPYYAGNKNDFDKLIFVFLDEDSAFAAAQSGQLGVVRIPPSMAVGSV
NNMKLWVRPSVENRGIVFPTTPAGKKDAHGYPIGNDVTADVAIRRAINYAINRQLLADQIMEGHAIPAYTGVQGLPWNNP
DSAIKDGDIDKAKQILEQAGWQLNSQGIREKNGLPAKITLWYTSGDTTRRDLAQALRSMLKPIGIDVDLKSGSWETVERN
MHANPTLFGWGSLDPMELYHHYSSNAAGVEYYNPGYYKNPMVDKHLQQALDAPTWQQAVPFWQQVDWDGTTGAGIRGDAA
WAWLLNIQHTYLANNCVDLGKGTPEIHGSWSLLNSIDSWKWTCQ

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789887, Length=355, Percent_Identity=26.4788732394366, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787762, Length=530, Percent_Identity=24.3396226415094, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787052, Length=489, Percent_Identity=24.7443762781186, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789966, Length=378, Percent_Identity=24.0740740740741, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081878, Length=411, Percent_Identity=24.8175182481752, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082063, Length=441, Percent_Identity=23.3560090702948, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57835; Mature: 57704

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRLWLRNTLVATALLSVFSVPVSAATHTLQLAIGDEPTEGFDPMLGWSHGSYLLLHSP
CCCCEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECC
LLKQNEDFSWDSLLLSQYQPSDDGKTWLLTLKPDLKFSDGSPLTAKDVAFTYNNAAASGG
HHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEEEECCCCCCCC
KVDMGNFLSAEVIDPLNVRIHLKAPQSTFVNVLGSLGIVSADKYNAKTYAQKPIGAGPYR
CEECCCCCCHHHCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCHHHHCCCCCCCCEE
LVSFQPGQQMIVEANPYYAGNKNDFDKLIFVFLDEDSAFAAAQSGQLGVVRIPPSMAVGS
EEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEECCCCCEECC
VNNMKLWVRPSVENRGIVFPTTPAGKKDAHGYPIGNDVTADVAIRRAINYAINRQLLADQ
CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IMEGHAIPAYTGVQGLPWNNPDSAIKDGDIDKAKQILEQAGWQLNSQGIREKNGLPAKIT
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCEEEE
LWYTSGDTTRRDLAQALRSMLKPIGIDVDLKSGSWETVERNMHANPTLFGWGSLDPMELY
EEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCCEEECCCCCHHHHH
HHYSSNAAGVEYYNPGYYKNPMVDKHLQQALDAPTWQQAVPFWQQVDWDGTTGAGIRGDA
HHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHCCCCCCCCCCCCCCC
AWAWLLNIQHTYLANNCVDLGKGTPEIHGSWSLLNSIDSWKWTCQ
EEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEC
>Mature Secondary Structure 
SRRLWLRNTLVATALLSVFSVPVSAATHTLQLAIGDEPTEGFDPMLGWSHGSYLLLHSP
CCCEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECC
LLKQNEDFSWDSLLLSQYQPSDDGKTWLLTLKPDLKFSDGSPLTAKDVAFTYNNAAASGG
HHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEEEECCCCCCCC
KVDMGNFLSAEVIDPLNVRIHLKAPQSTFVNVLGSLGIVSADKYNAKTYAQKPIGAGPYR
CEECCCCCCHHHCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCHHHHCCCCCCCCEE
LVSFQPGQQMIVEANPYYAGNKNDFDKLIFVFLDEDSAFAAAQSGQLGVVRIPPSMAVGS
EEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEECCCCCEECC
VNNMKLWVRPSVENRGIVFPTTPAGKKDAHGYPIGNDVTADVAIRRAINYAINRQLLADQ
CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IMEGHAIPAYTGVQGLPWNNPDSAIKDGDIDKAKQILEQAGWQLNSQGIREKNGLPAKIT
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCEEEE
LWYTSGDTTRRDLAQALRSMLKPIGIDVDLKSGSWETVERNMHANPTLFGWGSLDPMELY
EEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCCEEECCCCCHHHHH
HHYSSNAAGVEYYNPGYYKNPMVDKHLQQALDAPTWQQAVPFWQQVDWDGTTGAGIRGDA
HHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHCCCCCCCCCCCCCCC
AWAWLLNIQHTYLANNCVDLGKGTPEIHGSWSLLNSIDSWKWTCQ
EEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]