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The map label for this gene is gspD [C]

Identifier: 170022934

GI number: 170022934

Start: 745816

End: 747087

Strand: Reverse

Name: gspD [C]

Synonym: YPK_0685

Alternate gene names: 170022934

Gene position: 747087-745816 (Counterclockwise)

Preceding gene: 170022935

Following gene: 170022933

Centisome position: 15.93

GC content: 38.92

Gene sequence:

>1272_bases
TTGTCTATTGTTATTCTCTATTTTTTGTTTGAAAATTCAGCTAACGCCAAGCAAATTTATCTGCCTATTGGTGGTTCACA
CATTATAAAAATGCAGGAAGAGATCGACACTGTCTTTGTTTCTGCTGCAAAAACAGCTGACTATGAAATAGTTGATAATA
ACAGTGTGATTATTTATGCCAAAAAAGAAGGCTTGGCTGAATTCACTTTGTTCAATAAAAATCATCAGCCGATAAGTAAA
ACACGAGTGCTGGTGAATAATACTATCAATGATGCCTATCGAAGAATACGTACAGAGTTTCCTGATAGTAAGATAGAAAT
AAATAAAATAGGCGAAAGCTACATACTTACGGGCAGTGCCGAAACCGAGGAAGCAAAAGATACCATTGCCAATATTGTCG
GCGAGGCGACTGCAAGTAAAAAAGAAAAAGAGAGAGAAGAGCATTATCAAAGCAGCCCTGAATATCGGGGTGTTATTAAT
AAAATTAAATTACCTCAAGCCAATCAAGTTAATGTAAAGCTCACTATTGTCGAAATAACGAAAGATTTTACTGAAAACAT
AGGGCTAGATTGGAATTCGATAAAAAGTGCGGCAGGCGCTTTTCAGTTTTTAAATTTTAATGCACAAAGCATCAGCACAT
TAGTCCATGCTATTAATGATGAGGCGATAGCCAAAGTGTTGGCAGAACCAAATCTATCAGTCTTATCCGGTGAATATGCC
TCCTTCTTGGTCGGCGGTGAGATACCGATTGTTAGCACCAATCAGAATGGTATTAGTGTCGAATATAAAGAGTTTGGCAT
TAAGTTAAACATTGGTGCCAAAGTGAATGAGAAGAAACGTATTCGTGTCATGTTAGGTGAAGAGGTCAGCAGTATCGATA
AAGTATTTAATCTTAGAGGTGGGGACTCCTACCCTTCATTACGCATACGTAAGGCAAATACCACAGTAGAGTTAGGCGAT
GGTGAAAGTTTTATTCTCGGTGGCCTGATCAGTAGTACTGAACGGGAGTCGCTTAAAAAAATTCCGTTTATTGGTGATGT
CCCCCTACTGGGTGCGTTATTCCGTAATGCACAAACTCAGAGGAATCAGAGTGAGCTGGTGGTTGTCGCTACCGTAAACC
TAGTGAAACCCGTATCAGCAAGGCAGATTGAGCTACCCGATTTTATGCATACCTCTACGATAGAACGTTTTTTCAATCTG
ACCAATATCAAAGACGCTAAGCGTAGAAAGCAGGCGAAAGATTTTCTGCAAAAAGGAGGTTTTATAAAATGA

Upstream 100 bases:

>100_bases
AATAGATTTGGATGACATAATCCCTACATTACAAACAATAAGAGAGCTAAGAGGATGAATGTATATAAATTAAAAGATAA
AAAAAAATATAATTATATTC

Downstream 100 bases:

>100_bases
AATGGATATTCATCATAATGGCTATTCTCTTTTCTACTAGAGGCATCACTGCAATCACAATTAAACCGTCCGCTAATGAG
TACTCTTATGTATTAATAGG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSIVILYFLFENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISK
TRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIANIVGEATASKKEKEREEHYQSSPEYRGVIN
KIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIAKVLAEPNLSVLSGEYA
SFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGD
GESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTIERFFNL
TNIKDAKRRKQAKDFLQKGGFIK

Sequences:

>Translated_423_residues
MSIVILYFLFENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISK
TRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIANIVGEATASKKEKEREEHYQSSPEYRGVIN
KIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIAKVLAEPNLSVLSGEYA
SFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGD
GESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTIERFFNL
TNIKDAKRRKQAKDFLQKGGFIK
>Mature_422_residues
SIVILYFLFENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISKT
RVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIANIVGEATASKKEKEREEHYQSSPEYRGVINK
IKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIAKVLAEPNLSVLSGEYAS
FLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDG
ESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTIERFFNLT
NIKDAKRRKQAKDFLQKGGFIK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=149, Percent_Identity=34.8993288590604, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789793, Length=241, Percent_Identity=26.9709543568465, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 47085; Mature: 46954

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVILYFLFENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYA
CEEEEEEEEECCCCCCEEEEEEECCCEEEEEHHHHHEEEEEECCCCCEEEEECCEEEEEE
KKEGLAEFTLFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSA
ECCCCEEEEEECCCCCCHHHEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCEEEEECCC
ETEEAKDTIANIVGEATASKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEIT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEEEEEEE
KDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIAKVLAEPNLSVLSGEYA
HHHHHHCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCHH
SFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRG
EEEECCCEEEEECCCCCCEEEEHHCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCC
GDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQ
CCCCCCEEEEECCCEEEECCCCEEEEEHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCC
RNQSELVVVATVNLVKPVSARQIELPDFMHTSTIERFFNLTNIKDAKRRKQAKDFLQKGG
CCCCCEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
FIK
CCC
>Mature Secondary Structure 
SIVILYFLFENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYA
EEEEEEEEECCCCCCEEEEEEECCCEEEEEHHHHHEEEEEECCCCCEEEEECCEEEEEE
KKEGLAEFTLFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSA
ECCCCEEEEEECCCCCCHHHEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCEEEEECCC
ETEEAKDTIANIVGEATASKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEIT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEEEEEEE
KDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIAKVLAEPNLSVLSGEYA
HHHHHHCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCHH
SFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRG
EEEECCCEEEEECCCCCCEEEEHHCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCC
GDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQ
CCCCCCEEEEECCCEEEECCCCEEEEEHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCC
RNQSELVVVATVNLVKPVSARQIELPDFMHTSTIERFFNLTNIKDAKRRKQAKDFLQKGG
CCCCCEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
FIK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]