| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is yheS [H]
Identifier: 170022525
GI number: 170022525
Start: 303776
End: 305698
Strand: Reverse
Name: yheS [H]
Synonym: YPK_0264
Alternate gene names: 170022525
Gene position: 305698-303776 (Counterclockwise)
Preceding gene: 170022530
Following gene: 170022524
Centisome position: 6.52
GC content: 51.17
Gene sequence:
>1923_bases ATGATTGTTTTTTCCTCGCTTCAAATTCGACGTGGTACTCGCGTCTTGCTGGACAACGCCACAGCTACGATTAACCCCGG TCAGAAAGTCGGCCTGGTTGGCAAGAACGGTTGTGGTAAATCGACTCTGCTGGCGTTGCTCAAAGGCGAACTGAGCGCCG ATGGGGGCAATGTCACATTTCCCAATAACTGGGCACTGGCCTGGGTTAATCAGGAAACCCCGGCACTGGATATCCCGGCG ATAGAGTATGTTATCGACGGTGACCGCGAATATCGCCAGTTGGAGGCCGAACTTCAGGCTGCCAATGAAAAAAATGATGG CCATGCCATCGCAACCGTGCACGGTAAGCTGGATGCCATCCATGCCTGGACTATCCAATCGCGTGCGGCCAGTTTGCTCC ACGGGCTCGGGTTTTCTCAAGAAAAACTACAGCAACCGGTACGTTCATTTTCGGGTGGCTGGCGTATGCGTCTTAATCTG GCGCAGGCGCTGGTTTGCCGCTCTGATTTACTGCTCTTGGATGAACCAACCAACCACTTGGATTTGGATGCCGTCATCTG GCTGGAAAAATGGCTGAAAAGCTACACCGGTACCTTGGTGTTAATTTCCCATGACCGCGATTTCCTTGATCCTATTATCG ATAAGATTTTGCATATTGAACAGCAAACGCTGAATGAATATACCGGTAACTATTCATCGTTCGAACGCCAGCGCGCCACC AAACTGTCGCAACAACAATCGATGTATCAGCATCAGCAAGAAAAAGTGGCGCATTTACAAAGTTATATTGATCGCTTCCG GGCGCAAGCCACCAAAGCCAAGCAAGCCCAGAGCCGTATCAAGATGCTCGAGCGTATGGAGCTGATTGCCCCTGCACATG TGGATAATCCGTTCCACTTCAGTTTTCGTACACCAGAAAGCCTGCCAGATCCCTTGCTGCGCATGGATAAAGTCAGTGCC GGTTACGGGGAAAACACCGTCTTACAGTCCATTAAACTCAACCTGGTGCCCGGTTCACGCATCGGTCTCTTGGGGCGTAA TGGTGCCGGTAAATCAACGCTGATTAAATTATTGGCCGGGACGTTAGAACCGCAAAGCGGTGAGATCGCCCTGTCCAAAG GCATTAAACTCGGTTACTTCGCCCAGCATCAGTTGGAGTTCTTACGGGCTGATGAATCACCGTTGCAGCATATGAGCCGC CTGGCCCCTAAAGAGTCAGAGCAGCAATTGCGCGATTATCTCGGTGGTTACGGCTTTCAGGGCGATCAGGTGACCGACCC AACCGCCCGCTTCTCCGGTGGAGAGAAGGCGCGTTTAGTGCTGGCACTGATTATTTGGCAACGGCCGAATCTGTTACTGC TGGATGAGCCCACCAACCATTTGGATTTGGAAATGCGACAAGCCCTGACCGAGGCTCTGATTGATTTTGAAGGCGCATTG GTGGTGATTTCCCATGACCGTCATTTACTGCGCTCTACCACCGATGACCTCTATCTGGTGCACGACGGTAAAGTGGAACA GTTCGATGGCGATCTGGAAGATTATCAGCAGTGGCTGGTGGATTCACAGCGCCAGCAAAGCCAACAGGATAATCCGGCGA AGGAGCTATCGGGCAACAGCGCACAACAGCGTAAAGACCAAAAACGTCGCGATGCTGAATTCCGCACTCAAACGCAGCCA CTGCGTAAGCAGATTATGACGCTGGAAAAACAGATGGATAAACTCAGCACTGAGCTGGCCGCTATCGAAGCACAGTTGGC GGATTCAGCACTGTATGATATTGCGCGCAAAGCGGACTTGACCCAATGCCTACTGCAACAAACGCAAGTGAAATCCAAGC TGGAAGAGACGGAAATGCAGTGGTTAGATGTGCAAGAACAGCTTGAAATACTGACTAAAGAGTTTAGCGATGCCGATATA TAA
Upstream 100 bases:
>100_bases TACTCAAGTCAGTCATTAGGATGAGTGAACGTGGCTAACCCCTGTAACTTCAAGTGCAAAGGGGATGATAATTTAACATA TCCTAAACATGCGGCACTCT
Downstream 100 bases:
>100_bases TATCGGAAATATAGATATAACATCGCGAATGTAAATATGGCATCGTGAATATAGTCGTGCGAATTGAGTTAGAGTCGCAC GACTAGAGCGGCGTGATTTT
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 640; Mature: 640
Protein sequence:
>640_residues MIVFSSLQIRRGTRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKGELSADGGNVTFPNNWALAWVNQETPALDIPA IEYVIDGDREYRQLEAELQAANEKNDGHAIATVHGKLDAIHAWTIQSRAASLLHGLGFSQEKLQQPVRSFSGGWRMRLNL AQALVCRSDLLLLDEPTNHLDLDAVIWLEKWLKSYTGTLVLISHDRDFLDPIIDKILHIEQQTLNEYTGNYSSFERQRAT KLSQQQSMYQHQQEKVAHLQSYIDRFRAQATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRTPESLPDPLLRMDKVSA GYGENTVLQSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGTLEPQSGEIALSKGIKLGYFAQHQLEFLRADESPLQHMSR LAPKESEQQLRDYLGGYGFQGDQVTDPTARFSGGEKARLVLALIIWQRPNLLLLDEPTNHLDLEMRQALTEALIDFEGAL VVISHDRHLLRSTTDDLYLVHDGKVEQFDGDLEDYQQWLVDSQRQQSQQDNPAKELSGNSAQQRKDQKRRDAEFRTQTQP LRKQIMTLEKQMDKLSTELAAIEAQLADSALYDIARKADLTQCLLQQTQVKSKLEETEMQWLDVQEQLEILTKEFSDADI
Sequences:
>Translated_640_residues MIVFSSLQIRRGTRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKGELSADGGNVTFPNNWALAWVNQETPALDIPA IEYVIDGDREYRQLEAELQAANEKNDGHAIATVHGKLDAIHAWTIQSRAASLLHGLGFSQEKLQQPVRSFSGGWRMRLNL AQALVCRSDLLLLDEPTNHLDLDAVIWLEKWLKSYTGTLVLISHDRDFLDPIIDKILHIEQQTLNEYTGNYSSFERQRAT KLSQQQSMYQHQQEKVAHLQSYIDRFRAQATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRTPESLPDPLLRMDKVSA GYGENTVLQSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGTLEPQSGEIALSKGIKLGYFAQHQLEFLRADESPLQHMSR LAPKESEQQLRDYLGGYGFQGDQVTDPTARFSGGEKARLVLALIIWQRPNLLLLDEPTNHLDLEMRQALTEALIDFEGAL VVISHDRHLLRSTTDDLYLVHDGKVEQFDGDLEDYQQWLVDSQRQQSQQDNPAKELSGNSAQQRKDQKRRDAEFRTQTQP LRKQIMTLEKQMDKLSTELAAIEAQLADSALYDIARKADLTQCLLQQTQVKSKLEETEMQWLDVQEQLEILTKEFSDADI >Mature_640_residues MIVFSSLQIRRGTRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKGELSADGGNVTFPNNWALAWVNQETPALDIPA IEYVIDGDREYRQLEAELQAANEKNDGHAIATVHGKLDAIHAWTIQSRAASLLHGLGFSQEKLQQPVRSFSGGWRMRLNL AQALVCRSDLLLLDEPTNHLDLDAVIWLEKWLKSYTGTLVLISHDRDFLDPIIDKILHIEQQTLNEYTGNYSSFERQRAT KLSQQQSMYQHQQEKVAHLQSYIDRFRAQATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRTPESLPDPLLRMDKVSA GYGENTVLQSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGTLEPQSGEIALSKGIKLGYFAQHQLEFLRADESPLQHMSR LAPKESEQQLRDYLGGYGFQGDQVTDPTARFSGGEKARLVLALIIWQRPNLLLLDEPTNHLDLEMRQALTEALIDFEGAL VVISHDRHLLRSTTDDLYLVHDGKVEQFDGDLEDYQQWLVDSQRQQSQQDNPAKELSGNSAQQRKDQKRRDAEFRTQTQP LRKQIMTLEKQMDKLSTELAAIEAQLADSALYDIARKADLTQCLLQQTQVKSKLEETEMQWLDVQEQLEILTKEFSDADI
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=537, Percent_Identity=37.6163873370577, Blast_Score=374, Evalue=1e-103, Organism=Homo sapiens, GI10947137, Length=527, Percent_Identity=36.2428842504744, Blast_Score=326, Evalue=5e-89, Organism=Homo sapiens, GI27881506, Length=526, Percent_Identity=35.7414448669202, Blast_Score=325, Evalue=8e-89, Organism=Homo sapiens, GI69354671, Length=551, Percent_Identity=34.8457350272232, Blast_Score=277, Evalue=2e-74, Organism=Homo sapiens, GI10947135, Length=551, Percent_Identity=34.8457350272232, Blast_Score=277, Evalue=2e-74, Organism=Escherichia coli, GI1789751, Length=629, Percent_Identity=81.2400635930048, Blast_Score=1065, Evalue=0.0, Organism=Escherichia coli, GI1787041, Length=527, Percent_Identity=33.7760910815939, Blast_Score=309, Evalue=4e-85, Organism=Escherichia coli, GI2367384, Length=528, Percent_Identity=31.4393939393939, Blast_Score=231, Evalue=1e-61, Organism=Escherichia coli, GI1787182, Length=594, Percent_Identity=27.6094276094276, Blast_Score=228, Evalue=7e-61, Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=33.5078534031414, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI87081782, Length=553, Percent_Identity=24.9547920433996, Blast_Score=86, Evalue=8e-18, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=29.7674418604651, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI48994997, Length=249, Percent_Identity=26.5060240963855, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=26.2222222222222, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=26.1467889908257, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=23.5555555555556, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI1787547, Length=200, Percent_Identity=25, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1787758, Length=208, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=28.0193236714976, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI48994883, Length=226, Percent_Identity=25.6637168141593, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1786803, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1788225, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1787500, Length=305, Percent_Identity=22.9508196721311, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=25.2918287937743, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=28.6384976525822, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17553372, Length=530, Percent_Identity=38.6792452830189, Blast_Score=360, Evalue=2e-99, Organism=Caenorhabditis elegans, GI17555318, Length=540, Percent_Identity=35, Blast_Score=329, Evalue=2e-90, Organism=Caenorhabditis elegans, GI17559834, Length=548, Percent_Identity=33.5766423357664, Blast_Score=313, Evalue=2e-85, Organism=Caenorhabditis elegans, GI17511077, Length=278, Percent_Identity=24.4604316546763, Blast_Score=69, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533592, Length=267, Percent_Identity=25.4681647940075, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=35.7142857142857, Blast_Score=348, Evalue=2e-96, Organism=Saccharomyces cerevisiae, GI6320874, Length=529, Percent_Identity=34.9716446124764, Blast_Score=328, Evalue=1e-90, Organism=Saccharomyces cerevisiae, GI6325030, Length=391, Percent_Identity=30.9462915601023, Blast_Score=161, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6324314, Length=400, Percent_Identity=29, Blast_Score=146, Evalue=8e-36, Organism=Saccharomyces cerevisiae, GI6323278, Length=392, Percent_Identity=28.0612244897959, Blast_Score=141, Evalue=3e-34, Organism=Drosophila melanogaster, GI24666836, Length=519, Percent_Identity=38.150289017341, Blast_Score=374, Evalue=1e-104, Organism=Drosophila melanogaster, GI24642252, Length=514, Percent_Identity=39.2996108949416, Blast_Score=366, Evalue=1e-101, Organism=Drosophila melanogaster, GI18859989, Length=514, Percent_Identity=39.2996108949416, Blast_Score=366, Evalue=1e-101, Organism=Drosophila melanogaster, GI24641342, Length=533, Percent_Identity=35.0844277673546, Blast_Score=309, Evalue=3e-84, Organism=Drosophila melanogaster, GI116007184, Length=200, Percent_Identity=28, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI221500365, Length=200, Percent_Identity=28, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574259, Length=246, Percent_Identity=26.4227642276423, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 72199; Mature: 72199
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVFSSLQIRRGTRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKGELSADGGNVTF CEEECCEEECCCCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEC PNNWALAWVNQETPALDIPAIEYVIDGDREYRQLEAELQAANEKNDGHAIATVHGKLDAI CCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE HAWTIQSRAASLLHGLGFSQEKLQQPVRSFSGGWRMRLNLAQALVCRSDLLLLDEPTNHL EEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCC DLDAVIWLEKWLKSYTGTLVLISHDRDFLDPIIDKILHIEQQTLNEYTGNYSSFERQRAT CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KLSQQQSMYQHQQEKVAHLQSYIDRFRAQATKAKQAQSRIKMLERMELIAPAHVDNPFHF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE SFRTPESLPDPLLRMDKVSAGYGENTVLQSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG EECCCCCCCCHHHHHHHHCCCCCCHHHHHHEEEEECCCCCEEEEECCCCCHHHHHHHHHH TLEPQSGEIALSKGIKLGYFAQHQLEFLRADESPLQHMSRLAPKESEQQLRDYLGGYGFQ CCCCCCCCEEEECCCEEEHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCC GDQVTDPTARFSGGEKARLVLALIIWQRPNLLLLDEPTNHLDLEMRQALTEALIDFEGAL CCCCCCCHHHCCCCCHHHHHEEEHEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE VVISHDRHLLRSTTDDLYLVHDGKVEQFDGDLEDYQQWLVDSQRQQSQQDNPAKELSGNS EEEECCCHHHHCCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCC AQQRKDQKRRDAEFRTQTQPLRKQIMTLEKQMDKLSTELAAIEAQLADSALYDIARKADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQCLLQQTQVKSKLEETEMQWLDVQEQLEILTKEFSDADI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIVFSSLQIRRGTRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKGELSADGGNVTF CEEECCEEECCCCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEC PNNWALAWVNQETPALDIPAIEYVIDGDREYRQLEAELQAANEKNDGHAIATVHGKLDAI CCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE HAWTIQSRAASLLHGLGFSQEKLQQPVRSFSGGWRMRLNLAQALVCRSDLLLLDEPTNHL EEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCC DLDAVIWLEKWLKSYTGTLVLISHDRDFLDPIIDKILHIEQQTLNEYTGNYSSFERQRAT CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KLSQQQSMYQHQQEKVAHLQSYIDRFRAQATKAKQAQSRIKMLERMELIAPAHVDNPFHF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE SFRTPESLPDPLLRMDKVSAGYGENTVLQSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG EECCCCCCCCHHHHHHHHCCCCCCHHHHHHEEEEECCCCCEEEEECCCCCHHHHHHHHHH TLEPQSGEIALSKGIKLGYFAQHQLEFLRADESPLQHMSRLAPKESEQQLRDYLGGYGFQ CCCCCCCCEEEECCCEEEHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCC GDQVTDPTARFSGGEKARLVLALIIWQRPNLLLLDEPTNHLDLEMRQALTEALIDFEGAL CCCCCCCHHHCCCCCHHHHHEEEHEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE VVISHDRHLLRSTTDDLYLVHDGKVEQFDGDLEDYQQWLVDSQRQQSQQDNPAKELSGNS EEEECCCHHHHCCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCC AQQRKDQKRRDAEFRTQTQPLRKQIMTLEKQMDKLSTELAAIEAQLADSALYDIARKADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQCLLQQTQVKSKLEETEMQWLDVQEQLEILTKEFSDADI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]