Click here to switch to the map view.

The map label for this gene is sfsB [H]

Identifier: 170022478

GI number: 170022478

Start: 255051

End: 255296

Strand: Reverse

Name: sfsB [H]

Synonym: YPK_0217

Alternate gene names: 170022478

Gene position: 255296-255051 (Counterclockwise)

Preceding gene: 170022480

Following gene: 170022477

Centisome position: 5.44

GC content: 44.31

Gene sequence:

>246_bases
ATGATGAATAGAAATGAAGTGGCTTGTAGTGATATGCACCGAATAGATATTGTTGCATCGTTACATAAACAAGGTGTAAC
CATGCGAGACCTGTCTATTGAGGCTGGTTTAGCTGCAGATACACTCAAAAACGCTCTGTATCGCCCTTACCCAAAAGGGG
AAAAAATCATTGCCCAGGCATTGGGTTTAGAACCAGCAAATATTTGGCCGAGTCGCTACCCCGCTTTAACTCGCAGGGTG
GCTTAA

Upstream 100 bases:

>100_bases
CATATTTTTACTTTACGTGACTAGTATTTGGATCAATACTCTATCCATACGGATAACCTTTACGGCTTATCCGCGCGGTT
CAACTTTTTAGGGTAATCGA

Downstream 100 bases:

>100_bases
CATGTTTCTTTCTGTGAATGAGCTGATTGGGTTACCGGGTATGCCTGGGACTGCTCCGGGTATTAGGGCTGCGCTTAACA
AGCGCGCGGGTAGTTCACTG

Product: putative transcriptional regulator Nlp

Products: NA

Alternate protein names: Ner-like protein [H]

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MMNRNEVACSDMHRIDIVASLHKQGVTMRDLSIEAGLAADTLKNALYRPYPKGEKIIAQALGLEPANIWPSRYPALTRRV
A

Sequences:

>Translated_81_residues
MMNRNEVACSDMHRIDIVASLHKQGVTMRDLSIEAGLAADTLKNALYRPYPKGEKIIAQALGLEPANIWPSRYPALTRRV
A
>Mature_81_residues
MMNRNEVACSDMHRIDIVASLHKQGVTMRDLSIEAGLAADTLKNALYRPYPKGEKIIAQALGLEPANIWPSRYPALTRRV
A

Specific function: This protein is involved in positive regulation of the metabolism of sugars [H]

COG id: COG3423

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ner transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1789579, Length=63, Percent_Identity=57.1428571428571, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010982 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9020; Mature: 9020

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNRNEVACSDMHRIDIVASLHKQGVTMRDLSIEAGLAADTLKNALYRPYPKGEKIIAQA
CCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
LGLEPANIWPSRYPALTRRVA
HCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MMNRNEVACSDMHRIDIVASLHKQGVTMRDLSIEAGLAADTLKNALYRPYPKGEKIIAQA
CCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
LGLEPANIWPSRYPALTRRVA
HCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]