Click here to switch to the map view.

The map label for this gene is ybgD [H]

Identifier: 170022313

GI number: 170022313

Start: 55655

End: 56212

Strand: Direct

Name: ybgD [H]

Synonym: YPK_0051

Alternate gene names: 170022313

Gene position: 55655-56212 (Clockwise)

Preceding gene: 170022312

Following gene: 170022314

Centisome position: 1.19

GC content: 46.06

Gene sequence:

>558_bases
ATGTCTAACGTTAAGAAAAGCACTTTTATTATTGCTTTAGCAACTTTATCTGTTATTTATCAGGCTTTAGCTGCTGATGC
AGGGAATGGGCGTATTAAGTTCACTGGAACGGTTATTAATGCACCGTGCTCAATTGCATTAGATTCTACTGATATTAATG
TAGACCTAGGGCAGGTCGCGAATAGGGTTCTGGAGACGGGTAACAAATACTCTCAGAGCGTACGGTATAACATTAATCTG
CAAGATTGTAGCCTGACGGCTCAAGGGAGTGGGGGGGCCACTTATCCTGCACTGTCTAAAGTCAATGTCACTTTCAGCGG
TATTGCTGATGCGGCGGCTCCAGCCCTGCTGGCTAACACCGGTAGCGCGAAAGGCGTGGGTGTTCGCCTTATTGGCACTG
ATGACGCGCTACTCAAAGTGGGTGATACGAGTCCTGATATTAATCTGACATCTGGTCCGAATCAGATTGTATTTGCTGCT
CGTATTGAAGCCACCAGTGCGCCAGTAACTACCGGTACTGTTGTCTCTCAGGCAACCTATGCTCTGAATTATAAATAA

Upstream 100 bases:

>100_bases
AATTTAACCATGGTTGTACTCATTATTAATAATTCTATTATGTGATTGGTATTTCAGAGATATATCCTTTAAATGCAATA
TCTACATAAAGGTTTTTAAT

Downstream 100 bases:

>100_bases
CAAATGTTTAAAGTAATTAAAGGGGAGGTAACTCCCCTCTAATTAATATTATCGCCATAAGACAATGGTTTATATATGCC
ATATAATTCTAAAAGAAAAA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MSNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINL
QDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFAA
RIEATSAPVTTGTVVSQATYALNYK

Sequences:

>Translated_185_residues
MSNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINL
QDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFAA
RIEATSAPVTTGTVVSQATYALNYK
>Mature_184_residues
SNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINLQ
DCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFAAR
IEATSAPVTTGTVVSQATYALNYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=184, Percent_Identity=38.5869565217391, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1789422, Length=194, Percent_Identity=37.1134020618557, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI87081805, Length=184, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790773, Length=190, Percent_Identity=31.0526315789474, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082421, Length=192, Percent_Identity=28.125, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787781, Length=173, Percent_Identity=30.0578034682081, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18944; Mature: 18812

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVA
CCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEECCCCCEEEHHHHH
NRVLETGNKYSQSVRYNINLQDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANT
HHHHHCCCCCCCEEEEEEEEECCEEEECCCCCCCCCCEEEEEEEECCCCCHHCCEEEECC
GSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFAARIEATSAPVTTGTVVSQATY
CCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCEEECEEE
ALNYK
EEECC
>Mature Secondary Structure 
SNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVA
CCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEECCCCCEEEHHHHH
NRVLETGNKYSQSVRYNINLQDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANT
HHHHHCCCCCCCEEEEEEEEECCEEEECCCCCCCCCCEEEEEEEECCCCCHHCCEEEECC
GSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFAARIEATSAPVTTGTVVSQATY
CCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCEEECEEE
ALNYK
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]