Click here to switch to the map view.

The map label for this gene is ytfH [H]

Identifier: 169630775

GI number: 169630775

Start: 3749719

End: 3750129

Strand: Reverse

Name: ytfH [H]

Synonym: MAB_3696c

Alternate gene names: 169630775

Gene position: 3750129-3749719 (Counterclockwise)

Preceding gene: 169630778

Following gene: 169630772

Centisome position: 74.01

GC content: 63.5

Gene sequence:

>411_bases
ATGTATCCCTCGTCACAGCCCACGGATGACTGGTGGGGAAACCTGTTCGATACGCAGTGCCCTACCCGGATCGTGCTGGA
CAGGATCGGGGACAAGTGGACGGTCCTGGTGGTCGCGGCCCTTGCCGACGGACCCATGCGGTTCACTGCCCTACGAGATC
GGATCGGCGGCGTCACCGGCAAGGTGCTTACCTCCACATTGCGTTCGATGCTCCGTGACGGGCTGGTGAAACGGACGGCC
TATGCCACCGTCCCGCCGAAGGTGGAATACCAGCTGACCGAGTTGGGGCTGTCCCTGCGTGAGCCCATCGACCAACTACG
GACGTGGGCGGAGCGCAATGTGGCCCACATCGTCCGCAATCGGGAAGCCCACGACGGGGACATGCCGTCGACAGACACAG
CCATTGGGTGA

Upstream 100 bases:

>100_bases
ATTGCGATCTTCATGGGGCACGTCCCTTCGTCGATTTGTGTGGACGCCCCAAGGTATCCAATGGTAACTTGGTACCTCAA
AGTAACTAATGGAGCTTTCA

Downstream 100 bases:

>100_bases
ATACGTCCTGGCGTGCGTGAAGTTCAGAGGTTGTGCAGCAAAAAGAGCGTCCTGACGAGGACCAACGCGCATAGCGTCGG
CCAGTACCAAATGTGCCAAT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MYPSSQPTDDWWGNLFDTQCPTRIVLDRIGDKWTVLVVAALADGPMRFTALRDRIGGVTGKVLTSTLRSMLRDGLVKRTA
YATVPPKVEYQLTELGLSLREPIDQLRTWAERNVAHIVRNREAHDGDMPSTDTAIG

Sequences:

>Translated_136_residues
MYPSSQPTDDWWGNLFDTQCPTRIVLDRIGDKWTVLVVAALADGPMRFTALRDRIGGVTGKVLTSTLRSMLRDGLVKRTA
YATVPPKVEYQLTELGLSLREPIDQLRTWAERNVAHIVRNREAHDGDMPSTDTAIG
>Mature_136_residues
MYPSSQPTDDWWGNLFDTQCPTRIVLDRIGDKWTVLVVAALADGPMRFTALRDRIGGVTGKVLTSTLRSMLRDGLVKRTA
YATVPPKVEYQLTELGLSLREPIDQLRTWAERNVAHIVRNREAHDGDMPSTDTAIG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=110, Percent_Identity=43.6363636363636, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15224; Mature: 15224

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPSSQPTDDWWGNLFDTQCPTRIVLDRIGDKWTVLVVAALADGPMRFTALRDRIGGVTG
CCCCCCCCCHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHH
KVLTSTLRSMLRDGLVKRTAYATVPPKVEYQLTELGLSLREPIDQLRTWAERNVAHIVRN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
REAHDGDMPSTDTAIG
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYPSSQPTDDWWGNLFDTQCPTRIVLDRIGDKWTVLVVAALADGPMRFTALRDRIGGVTG
CCCCCCCCCHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHH
KVLTSTLRSMLRDGLVKRTAYATVPPKVEYQLTELGLSLREPIDQLRTWAERNVAHIVRN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
REAHDGDMPSTDTAIG
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]