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The map label for this gene is ydeS [H]

Identifier: 169630645

GI number: 169630645

Start: 3610096

End: 3610704

Strand: Direct

Name: ydeS [H]

Synonym: MAB_3565

Alternate gene names: 169630645

Gene position: 3610096-3610704 (Clockwise)

Preceding gene: 169630639

Following gene: 169630662

Centisome position: 71.24

GC content: 65.68

Gene sequence:

>609_bases
ATGGCAAATCGGCAGACTGTGCAGGGAGTACGGACCGGTGGCCGCAGCGCACGAGTCCGGGAGGCGATCCTCGACGCCGC
CTTCGGCGAGCTGATCGACCGCGGATACGCCGAACTGACGATGGAAGCCGTCGCCTCCCGCGCGGGCGTCAACAAGACCA
CCATCTACCGGCGCTGGCCTACGCTCGAGGATCTGCTCGTGGAGGCCCTCACCACGTGGTCGCTCGAAGCCATCCCCATT
CCCGAAACCGGGAGCATCGAATCGGATCTGCTCTCGACCGGCCGTGAGCTCGCCGCCGTTCTCAACGACGGTGTCGGACG
CCAGGTTGCCGCGCTCGTCCTCACGGCCGGTCTCAGGTCCGCACCGCTTCGTGAGGCAACCCGGCGGTACTTCGATCACC
AGGTCTTACGCGCCGCTCCCGTCGTCAGACAGGCAATCGATCGCGGTGAACTCCCCGCCGACTGCGATGTCGACATGCTC
CTCACCACGTTTCGCGCCCCGCTGTTCTACCGCACGATCACCACAGGCGATCCCATCGATGACGCGCTGATCATCCACGC
CACACAGATCACGTTAACGGCGGCACGGGCGGGTCTACTGTCGGCCTGA

Upstream 100 bases:

>100_bases
AGATGAATCGCATGCCACCCTCCCTGTTATCGCAACGGGTAGTTGCCATAAGCTGAGAGTTGCACACCGGGATCACTAAC
GCAACTCATGGAGGCGATTA

Downstream 100 bases:

>100_bases
CCGGATCGCTTGCCTCACTTGATGGCCAACGCAGACACCGGACTACCCGACGCTCCGGTCAGCGGCAGCGGCGACGCCAC
GAACATGAACTCGTACACGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MANRQTVQGVRTGGRSARVREAILDAAFGELIDRGYAELTMEAVASRAGVNKTTIYRRWPTLEDLLVEALTTWSLEAIPI
PETGSIESDLLSTGRELAAVLNDGVGRQVAALVLTAGLRSAPLREATRRYFDHQVLRAAPVVRQAIDRGELPADCDVDML
LTTFRAPLFYRTITTGDPIDDALIIHATQITLTAARAGLLSA

Sequences:

>Translated_202_residues
MANRQTVQGVRTGGRSARVREAILDAAFGELIDRGYAELTMEAVASRAGVNKTTIYRRWPTLEDLLVEALTTWSLEAIPI
PETGSIESDLLSTGRELAAVLNDGVGRQVAALVLTAGLRSAPLREATRRYFDHQVLRAAPVVRQAIDRGELPADCDVDML
LTTFRAPLFYRTITTGDPIDDALIIHATQITLTAARAGLLSA
>Mature_201_residues
ANRQTVQGVRTGGRSARVREAILDAAFGELIDRGYAELTMEAVASRAGVNKTTIYRRWPTLEDLLVEALTTWSLEAIPIP
ETGSIESDLLSTGRELAAVLNDGVGRQVAALVLTAGLRSAPLREATRRYFDHQVLRAAPVVRQAIDRGELPADCDVDMLL
TTFRAPLFYRTITTGDPIDDALIIHATQITLTAARAGLLSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21898; Mature: 21767

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANRQTVQGVRTGGRSARVREAILDAAFGELIDRGYAELTMEAVASRAGVNKTTIYRRWP
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
TLEDLLVEALTTWSLEAIPIPETGSIESDLLSTGRELAAVLNDGVGRQVAALVLTAGLRS
CHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
APLREATRRYFDHQVLRAAPVVRQAIDRGELPADCDVDMLLTTFRAPLFYRTITTGDPID
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHEEEECCCCCCC
DALIIHATQITLTAARAGLLSA
CEEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANRQTVQGVRTGGRSARVREAILDAAFGELIDRGYAELTMEAVASRAGVNKTTIYRRWP
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
TLEDLLVEALTTWSLEAIPIPETGSIESDLLSTGRELAAVLNDGVGRQVAALVLTAGLRS
CHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
APLREATRRYFDHQVLRAAPVVRQAIDRGELPADCDVDMLLTTFRAPLFYRTITTGDPID
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHEEEECCCCCCC
DALIIHATQITLTAARAGLLSA
CEEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]